BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0102300 Os03g0102300|Os03g0102300
(1729 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0102300 CCR4-Not complex component, Not1 family protein 3407 0.0
Os10g0556801 CCR4-Not complex component, Not1 family protein 980 0.0
>Os03g0102300 CCR4-Not complex component, Not1 family protein
Length = 1729
Score = 3407 bits (8835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1657/1729 (95%), Positives = 1657/1729 (95%)
Query: 1 MISEISATEVRLLLLQAAADSNLDSVRRRLCQLVDSGLDGCIXXXXXXXXXXXXKPHQLD 60
MISEISATEVRLLLLQAAADSNLDSVRRRLCQLVDSGLDGCI KPHQLD
Sbjct: 1 MISEISATEVRLLLLQAAADSNLDSVRRRLCQLVDSGLDGCILLLQVCLDQVLLKPHQLD 60
Query: 61 KSKHDLLSAVFRYCMDKTYFTTCFCEALGPMPATHGDGFLKTLSNVLELSPAERVGIGLA 120
KSKHDLLSAVFRYCMDKTYFTTCFCEALGPMPATHGDGFLKTLSNVLELSPAERVGIGLA
Sbjct: 61 KSKHDLLSAVFRYCMDKTYFTTCFCEALGPMPATHGDGFLKTLSNVLELSPAERVGIGLA 120
Query: 121 LSDSEDSGLKLKGQQFSIAQIEGLCLNLLQSPSNDQIHDIVIFLHQTDGLSKHMDTFNTI 180
LSDSEDSGLKLKGQQFSIAQIEGLCLNLLQSPSNDQIHDIVIFLHQTDGLSKHMDTFNTI
Sbjct: 121 LSDSEDSGLKLKGQQFSIAQIEGLCLNLLQSPSNDQIHDIVIFLHQTDGLSKHMDTFNTI 180
Query: 181 ISLFKTKETPFFAPTPFNKCDIQSRHLDMCFGSMDYDXXXXXXXXXXXXTMADIVTELGY 240
ISLFKTKETPFFAPTPFNKCDIQSRHLDMCFGSMDYD TMADIVTELGY
Sbjct: 181 ISLFKTKETPFFAPTPFNKCDIQSRHLDMCFGSMDYDSELLLSEIEKEITMADIVTELGY 240
Query: 241 GCTVDTTHCKEILSIFEPLDDVAVSKLVGAVIGTHNVLVEAHNTYAMFVSAISNMNDSPQ 300
GCTVDTTHCKEILSIFEPLDDVAVSKLVGAVIGTHNVLVEAHNTYAMFVSAISNMNDSPQ
Sbjct: 241 GCTVDTTHCKEILSIFEPLDDVAVSKLVGAVIGTHNVLVEAHNTYAMFVSAISNMNDSPQ 300
Query: 301 LTTWNTDVLVDSINELAPSTNWVHVMENLDHEGFNVPDEAAFCLLMSIYAHPCKEPFPLH 360
LTTWNTDVLVDSINELAPSTNWVHVMENLDHEGFNVPDEAAFCLLMSIYAHPCKEPFPLH
Sbjct: 301 LTTWNTDVLVDSINELAPSTNWVHVMENLDHEGFNVPDEAAFCLLMSIYAHPCKEPFPLH 360
Query: 361 AVCGSLWTNTEGQISFLKHAVSVPTDTFTFSHCSRKLAFPDLACPIQDNHAWFCLDLMVV 420
AVCGSLWTNTEGQISFLKHAVSVPTDTFTFSHCSRKLAFPDLACPIQDNHAWFCLDLMVV
Sbjct: 361 AVCGSLWTNTEGQISFLKHAVSVPTDTFTFSHCSRKLAFPDLACPIQDNHAWFCLDLMVV 420
Query: 421 LCQLAEVGHTVSVQSMLEYPLQHCPELLIVGLGHVNTAYNLLQYEVQSRVFPAILKDATK 480
LCQLAEVGHTVSVQSMLEYPLQHCPELLIVGLGHVNTAYNLLQYEVQSRVFPAILKDATK
Sbjct: 421 LCQLAEVGHTVSVQSMLEYPLQHCPELLIVGLGHVNTAYNLLQYEVQSRVFPAILKDATK 480
Query: 481 SNVVNYLWQINPSLTLRGFVDAHSDPDCLLRIVDVCRDLKILSAVLDSTPYAFSIKLAVA 540
SNVVNYLWQINPSLTLRGFVDAHSDPDCLLRIVDVCRDLKILSAVLDSTPYAFSIKLAVA
Sbjct: 481 SNVVNYLWQINPSLTLRGFVDAHSDPDCLLRIVDVCRDLKILSAVLDSTPYAFSIKLAVA 540
Query: 541 ASRIDHSHLEKWLIAKLRVCKDDFLQILQYQSGHLLSNQKLDELRKSYISYELRNHDSVV 600
ASRIDHSHLEKWLIAKLRVCKDDFLQILQYQSGHLLSNQKLDELRKSYISYELRNHDSVV
Sbjct: 541 ASRIDHSHLEKWLIAKLRVCKDDFLQILQYQSGHLLSNQKLDELRKSYISYELRNHDSVV 600
Query: 601 RGIPTSDNVEIEADAYFHQMFSGQISIAAIVQMLSRFKNSPEKREQLIFKCMISNMFEEY 660
RGIPTSDNVEIEADAYFHQMFSGQISIAAIVQMLSRFKNSPEKREQLIFKCMISNMFEEY
Sbjct: 601 RGIPTSDNVEIEADAYFHQMFSGQISIAAIVQMLSRFKNSPEKREQLIFKCMISNMFEEY 660
Query: 661 KFLPKYPDKQLKLSALLFGSLIKHRLVTHLELGIALHAVLDALHKSVDSKMFMFGTTALE 720
KFLPKYPDKQLKLSALLFGSLIKHRLVTHLELGIALHAVLDALHKSVDSKMFMFGTTALE
Sbjct: 661 KFLPKYPDKQLKLSALLFGSLIKHRLVTHLELGIALHAVLDALHKSVDSKMFMFGTTALE 720
Query: 721 QFMDRLIEWPDYCNHILQISHLCGAHTEMVSAIERALARISSSQNELSVNISVSSEQHVT 780
QFMDRLIEWPDYCNHILQISHLCGAHTEMVSAIERALARISSSQNELSVNISVSSEQHVT
Sbjct: 721 QFMDRLIEWPDYCNHILQISHLCGAHTEMVSAIERALARISSSQNELSVNISVSSEQHVT 780
Query: 781 GLAPIEPIERGEWARPRLVVVYGSSFFALAADFHDMTSITXXXXXXXXXRLLINHLHYLP 840
GLAPIEPIERGEWARPRLVVVYGSSFFALAADFHDMTSIT RLLINHLHYLP
Sbjct: 781 GLAPIEPIERGEWARPRLVVVYGSSFFALAADFHDMTSITHPHHHSPSHRLLINHLHYLP 840
Query: 841 LINCPVCHLLCMLLFFHILKVPAQAKAKECIEVLPECYYPWFAQSMVMKRASIEPKFHDL 900
LINCPVCHLLCMLLFFHILKVPAQAKAKECIEVLPECYYPWFAQSMVMKRASIEPKFHDL
Sbjct: 841 LINCPVCHLLCMLLFFHILKVPAQAKAKECIEVLPECYYPWFAQSMVMKRASIEPKFHDL 900
Query: 901 YLKFFVKVNSRFLNKEVLKATYENCKILLRSDLIKSSSEERSLLKNLGSWLGKFTIGRNQ 960
YLKFFVKVNSRFLNKEVLKATYENCKILLRSDLIKSSSEERSLLKNLGSWLGKFTIGRNQ
Sbjct: 901 YLKFFVKVNSRFLNKEVLKATYENCKILLRSDLIKSSSEERSLLKNLGSWLGKFTIGRNQ 960
Query: 961 ALLAKEIDPKVLIVEAYEKGLMIAVIPFTSKVLFKNLDVDLKDVNPTSLLKDRVCEVEGN 1020
ALLAKEIDPKVLIVEAYEKGLMIAVIPFTSKVLFKNLDVDLKDVNPTSLLKDRVCEVEGN
Sbjct: 961 ALLAKEIDPKVLIVEAYEKGLMIAVIPFTSKVLFKNLDVDLKDVNPTSLLKDRVCEVEGN 1020
Query: 1021 PDFSNKDVAASQTQISSGISRSTNHVELQSVISSTSHAYATPHLPSNSMVEDDNVAFMMP 1080
PDFSNKDVAASQTQISSGISRSTNHVELQSVISSTSHAYATPHLPSNSMVEDDNVAFMMP
Sbjct: 1021 PDFSNKDVAASQTQISSGISRSTNHVELQSVISSTSHAYATPHLPSNSMVEDDNVAFMMP 1080
Query: 1081 KHVSSHTLTQVSPSETALASQSPFSLTQLVKLIPHDEIRCKISSKLGSLGRQLQYSKIMD 1140
KHVSSHTLTQVSPSETALASQSPFSLTQLVKLIPHDEIRCKISSKLGSLGRQLQYSKIMD
Sbjct: 1081 KHVSSHTLTQVSPSETALASQSPFSLTQLVKLIPHDEIRCKISSKLGSLGRQLQYSKIMD 1140
Query: 1141 TALDKAIKEILCPVVEKSVGTAIQNTKKLILKDYALESDNNTIKSSVHSIARTIAGNLAY 1200
TALDKAIKEILCPVVEKSVGTAIQNTKKLILKDYALESDNNTIKSSVHSIARTIAGNLAY
Sbjct: 1141 TALDKAIKEILCPVVEKSVGTAIQNTKKLILKDYALESDNNTIKSSVHSIARTIAGNLAY 1200
Query: 1201 ANCKEPLCVALTDHLQSQIQTLTSNNKTIKQXXXXXXXXXXXXGCRIIKSVAMCKAIEMI 1260
ANCKEPLCVALTDHLQSQIQTLTSNNKTIKQ GCRIIKSVAMCKAIEMI
Sbjct: 1201 ANCKEPLCVALTDHLQSQIQTLTSNNKTIKQLIDVLINDNLDLGCRIIKSVAMCKAIEMI 1260
Query: 1261 DEEITESFPLQKKQREAAGSAYCDAFTHAQGRFAHEPEALHPKHEHLSVAQQVTMFMYGR 1320
DEEITESFPLQKKQREAAGSAYCDAFTHAQGRFAHEPEALHPKHEHLSVAQQVTMFMYGR
Sbjct: 1261 DEEITESFPLQKKQREAAGSAYCDAFTHAQGRFAHEPEALHPKHEHLSVAQQVTMFMYGR 1320
Query: 1321 AIANMLTLHVLVSLELAVKHSLVPNQIVATGGVSQKSSQQLKISYFPIDSFSKLVAMVLK 1380
AIANMLTLHVLVSLELAVKHSLVPNQIVATGGVSQKSSQQLKISYFPIDSFSKLVAMVLK
Sbjct: 1321 AIANMLTLHVLVSLELAVKHSLVPNQIVATGGVSQKSSQQLKISYFPIDSFSKLVAMVLK 1380
Query: 1381 YSSAETGPNKCSLLPKILLVAVRIIQRDSEEKKASFNPRPYFRLFIXXXXXXXXXXXXXX 1440
YSSAETGPNKCSLLPKILLVAVRIIQRDSEEKKASFNPRPYFRLFI
Sbjct: 1381 YSSAETGPNKCSLLPKILLVAVRIIQRDSEEKKASFNPRPYFRLFISLLYDLISSDLHSD 1440
Query: 1441 GANFQVLIAFANAFHALQPLRIPSWSFCDMIPSSCIQMRNVILDAHPQDMRVVDPASPNL 1500
GANFQVLIAFANAFHALQPLRIPSWSFCDMIPSSCIQMRNVILDAHPQDMRVVDPASPNL
Sbjct: 1441 GANFQVLIAFANAFHALQPLRIPSWSFCDMIPSSCIQMRNVILDAHPQDMRVVDPASPNL 1500
Query: 1501 KIDLLPEISMAPQIMSDVEGALKSKLMKTEVDEYFKKSEGXXXXXXXXXXXXXPQNETSV 1560
KIDLLPEISMAPQIMSDVEGALKSKLMKTEVDEYFKKSEG PQNETSV
Sbjct: 1501 KIDLLPEISMAPQIMSDVEGALKSKLMKTEVDEYFKKSEGSLFLSDLKQKLLLPQNETSV 1560
Query: 1561 AGTRYNVPLINSLVLYVGIQGLQQQQTESSASGPAIHTAHMDIFRTLMADLDTEGRYLVL 1620
AGTRYNVPLINSLVLYVGIQGLQQQQTESSASGPAIHTAHMDIFRTLMADLDTEGRYLVL
Sbjct: 1561 AGTRYNVPLINSLVLYVGIQGLQQQQTESSASGPAIHTAHMDIFRTLMADLDTEGRYLVL 1620
Query: 1621 NAIANQLRYPNIHTHCFYFIILHLFSEATQEIIQDQIMRVILERLVVRRPHPWGLQMTLV 1680
NAIANQLRYPNIHTHCFYFIILHLFSEATQEIIQDQIMRVILERLVVRRPHPWGLQMTLV
Sbjct: 1621 NAIANQLRYPNIHTHCFYFIILHLFSEATQEIIQDQIMRVILERLVVRRPHPWGLQMTLV 1680
Query: 1681 ELIKNPRYKLWSRPFIRCGPQIDKVLIEFVDMLDDPRLTSLYSSFRSIN 1729
ELIKNPRYKLWSRPFIRCGPQIDKVLIEFVDMLDDPRLTSLYSSFRSIN
Sbjct: 1681 ELIKNPRYKLWSRPFIRCGPQIDKVLIEFVDMLDDPRLTSLYSSFRSIN 1729
>Os10g0556801 CCR4-Not complex component, Not1 family protein
Length = 2400
Score = 980 bits (2534), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/833 (58%), Positives = 592/833 (71%), Gaps = 52/833 (6%)
Query: 7 ATEVRLLLLQAAADSNLDSVRRRLCQLVDSGLDGC--IXXXXXXXXXXXXKPHQLDKSKH 64
A +VR L+ Q DS DS R LCQL D DGC + + + K
Sbjct: 9 AEDVRSLV-QGVDDSTFDSTHRELCQLADCSPDGCSLLLQVCLDEVLLNADVAKSSRLKP 67
Query: 65 DLLSAVFRYCMDKTYFTTCFCEALGPMPATHGDGFLKTLSNVLELSPAERVGIGLALSDS 124
+LLS VF+YC+DK YF+T FCEAL + + D FL LSN L LS ERVG+GLALSDS
Sbjct: 68 ELLSTVFKYCLDKPYFSTSFCEALKTVHVS--DMFLVKLSNELNLSAGERVGVGLALSDS 125
Query: 125 EDSGLKLKGQQFSIAQIEGLCLNLLQSPSNDQIHDIVIFLHQTDGLSKHMDTFNTIISLF 184
+ GL KGQ+FSIA+IE +C N +NDQIHDIV+FLHQTDGLSKHMD+F IISL
Sbjct: 126 GNLGLITKGQKFSIAEIEEICANPAHVLTNDQIHDIVVFLHQTDGLSKHMDSFTNIISLL 185
Query: 185 KTKETPFFAPTPFNKCD----IQSRHLDMCFGSMDYDXXXXXXXXXXXXTMADIVTELGY 240
KE PF+ P P + + I SRH+++ GS+D D +MADI+TELGY
Sbjct: 186 NVKEMPFYVPAPIKEGNARPTISSRHMELYTGSLDDDFDSLLSEIGKEISMADIITELGY 245
Query: 241 GCTVDTTHCKEILSIFEPLDDVAVSKLVGAVIGTHNVLVEAHNTYAMFVSAISNM--NDS 298
GCT D HCKEILS+FEPLDD+ +SKL+GAV+ TH L EAHNTY+ F+SA+ N +DS
Sbjct: 246 GCTSDIAHCKEILSLFEPLDDMGISKLLGAVVCTHVGLGEAHNTYSTFMSAVGNSQPSDS 305
Query: 299 PQLTTWNTDVLVDSINELAPSTNWVHVMENLDHEGFNVPDEAAFCLLMSIYAHPCKEPFP 358
Q T WN DVLVDSINE+AP TNW+ V+ENLDHEGF +PDEAAFCLLMSIY+ CK+PFP
Sbjct: 306 SQFTAWNIDVLVDSINEIAPRTNWITVVENLDHEGFCIPDEAAFCLLMSIYSRACKDPFP 365
Query: 359 LHAVCGSLWTNTEGQISFLKHAVSVPTDTFTFSHCSRKLAFPDLACPIQDNHAWFCLDLM 418
LHAVCGSLW NTEGQ+SFLKHAV+ PTDTFTF HCSRK+ FP+ A +Q N AW+CLDL+
Sbjct: 366 LHAVCGSLWKNTEGQLSFLKHAVAAPTDTFTFKHCSRKMVFPEFANRMQGNQAWYCLDLL 425
Query: 419 VVLCQLAEVGHTVSVQSMLEYPLQHCPELLIVGLGHVNTAYNLLQYEVQSRVFPAILKDA 478
VLCQLAE+G+ V+SML+YPL HCP++L++G+ H+NT YNLLQYEV S VFP ILKD
Sbjct: 426 EVLCQLAELGYATMVRSMLDYPLIHCPDVLLLGVSHINTPYNLLQYEVLSCVFPMILKDT 485
Query: 479 TKSNVVNYLWQINPSLTLRGFVDAHSDPDCLLRIVDVCRDLKILSAVLDSTPYAFSIKLA 538
T S+++N LW +NP LTLRGFVD+HSD +CLLR V++C+DL ILSAVLDSTP+AFSIKLA
Sbjct: 486 TYSSLMNSLWHVNPYLTLRGFVDSHSDANCLLRTVEICQDLTILSAVLDSTPFAFSIKLA 545
Query: 539 VAASRIDHSHLEKWLIAKLRVCKDDFLQ-------------------------------- 566
A R HS+LEKWL+ KL + FL+
Sbjct: 546 TVAFRQSHSNLEKWLVEKLTAQGETFLEEIMSNTTYEAAEGAVQQPQVMILDICRESCPL 605
Query: 567 ---ILQYQSGHLLSNQKLDELRKSYISYELRNHDSVVRGIPTS----DNVEIEADAYFHQ 619
+LQ SG LLSNQ ++ELR+ +E RNH V R PTS D++E +A+ YFHQ
Sbjct: 606 IIKVLQSHSGQLLSNQLVEELRRVEAVHESRNHGVVGRDAPTSEGGPDDIEAQANIYFHQ 665
Query: 620 MFSGQISIAAIVQMLSRFKNSPEKREQLIFKCMISNMFEEYKFLPKYPDKQLKLSALLFG 679
MFSGQIS+ A+VQML+RFK S KRE IF CM+SN+FEEYKF PKYPD QLKL+A+L G
Sbjct: 666 MFSGQISVDAMVQMLARFKESTNKRELSIFNCMVSNLFEEYKFFPKYPDTQLKLAAVLMG 725
Query: 680 SLIKHRLVTHLELGIALHAVLDALHKSVDSKMFMFGTTALEQFMDRLIEWPDYCNHILQI 739
SLIKH+LV HL LGIAL +VLDAL KS+DSKMFMFGTTALEQFMDRLIEWP YCNHILQI
Sbjct: 726 SLIKHQLVAHLGLGIALRSVLDALRKSIDSKMFMFGTTALEQFMDRLIEWPQYCNHILQI 785
Query: 740 SHLCGAHTEMVSAIERALARISSSQNELSVNISVSSEQHVTGLAPIEPIERGE 792
SHL H E+V+AIER LA+ISSSQNE +V +S++QH G + I +E E
Sbjct: 786 SHLRATHAELVAAIERVLAKISSSQNEPNVGSMLSADQH--GSSSIGNMEASE 836
Score = 494 bits (1271), Expect = e-139, Method: Compositional matrix adjust.
Identities = 284/514 (55%), Positives = 352/514 (68%), Gaps = 57/514 (11%)
Query: 854 LFFHILKVPA---QAKAKECIEVLPECYYPWFAQSMVMKRASIEPKFHDLYLKFFVKVNS 910
+FF I + +AKA+E EVL E YYPWFAQ MVMKRASIEP FHDLYLKFF KVNS
Sbjct: 974 IFFMINNISTSNMEAKAREFNEVLQEQYYPWFAQYMVMKRASIEPNFHDLYLKFFDKVNS 1033
Query: 911 RFLNKEVLKATYENCKILLRSDLIKSSSEERSLLKNLGSWLGKFTIGRNQALLAKEIDPK 970
+ LNKE++KATYENCK+LL+SDLIKSSSEERSLLKNLGSWLGKFTIGRNQ L AKEIDPK
Sbjct: 1034 KSLNKEMVKATYENCKVLLQSDLIKSSSEERSLLKNLGSWLGKFTIGRNQTLRAKEIDPK 1093
Query: 971 VLIVEAYEKGLMIAVIPFTSK-------------------------------------VL 993
+LI+EAYE+GLMIA+IPFTSK VL
Sbjct: 1094 ILIIEAYERGLMIAIIPFTSKSSIAYRPPNPWTMGILSLLVEIYNLPNLKMNLKFDIEVL 1153
Query: 994 FKNLDVDLKDVNPTSLLKDRVCEVEGNPDFSNKDVAASQT----QISSGISRSTNHVELQ 1049
FKNL VD+KDV P+SLLKDR+ ++EGNPDFSNKDV+ASQ ++SSG+ + NHVE Q
Sbjct: 1154 FKNLSVDMKDVKPSSLLKDRIRQIEGNPDFSNKDVSASQAPVVAEVSSGVMPTINHVEPQ 1213
Query: 1050 SVISSTSHA---------YATP-HLPSNSMVEDDNVAFMMPKHVSSHTLTQVSPSETALA 1099
I+STS A YA P LP+N+MVEDD A +MP+ VSS L+QVSPS+T
Sbjct: 1214 PEINSTSRATSLPNMLSQYAAPLRLPTNNMVEDDKSALIMPEQVSSLGLSQVSPSQTPSL 1273
Query: 1100 SQSPFSLTQLVKLIPHDEIRCKISSKLGSLGRQLQYSKIMDTALDKAIKEILCPVVEKSV 1159
S S FSL+QL+ IP +I +I+ KL S G LQYSKIMD ALDKAIKEI+ PV+++SV
Sbjct: 1274 SSSSFSLSQLIAAIPRADIYFRINEKLSSFG-SLQYSKIMDMALDKAIKEIIGPVIQRSV 1332
Query: 1160 GTAIQNTKKLILKDYALESDNNTIKSSVHSIARTIAGNLAYANCKEPLCVALTDHLQSQI 1219
A + TK+LILKDYA+E+D++ + S H + T+AG+LA+ KEPL VAL+ HL+S I
Sbjct: 1333 TIASRTTKELILKDYAMEADDSAVSRSAHLMVGTLAGSLAHVTSKEPLRVALSSHLRSLI 1392
Query: 1220 QTLTSNNKTIKQXXXXXXXXXXXXGCRIIKSVAMCKAIEMIDEEITESFPLQKKQREAAG 1279
Q +T+N ++ +Q GC +I++VA KA+EMID EI + F ++Q+E G
Sbjct: 1393 QGITNNTESTEQIMLILVNDNLDLGCALIETVATRKAVEMIDGEIKQPFSQLRRQKELLG 1452
Query: 1280 SAYCDAFTHAQGRFAHEPEALHPK-HEHLSVAQQ 1312
SAY DAF + QG P+AL PK HLS AQ+
Sbjct: 1453 SAYYDAFPYTQG-LKRVPDALRPKPTGHLSAAQR 1485
Score = 327 bits (837), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 155/253 (61%), Positives = 193/253 (76%), Gaps = 12/253 (4%)
Query: 1465 WSFCDMIPSSCIQMRNVILDAHPQDMRVVDPASPNLKIDLLPEISMAPQIMSDVEGALKS 1524
+SFCD+IP SCIQMRNVIL A P++MR+ DP++PNLKIDLL EIS+ P+IMSDV+GALKS
Sbjct: 2126 FSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISIPPRIMSDVDGALKS 2185
Query: 1525 KLMKTEVDEYFKKSEGXXXXXXXXXXXXXPQNETSVAGTRYNVPLINSLVLYVGIQGLQQ 1584
K MKT+VDEY K+ +G PQNE ++AGTRYNVPL+NSLVLYVG+Q +QQ
Sbjct: 2186 KQMKTQVDEYLKRPDGSFLTDLKQKLLL-PQNEANIAGTRYNVPLVNSLVLYVGMQAVQQ 2244
Query: 1585 QQ---TESSASGPAIHTAHMDI--------FRTLMADLDTEGRYLVLNAIANQLRYPNIH 1633
Q +SAS ++ + +D+ FR L+ + DTEGRYL+LNAIANQLRYPN H
Sbjct: 2245 LQLNKMNASASAQQMNQSQLDVQIETATELFRNLVMNSDTEGRYLLLNAIANQLRYPNNH 2304
Query: 1634 THCFYFIILHLFSEATQEIIQDQIMRVILERLVVRRPHPWGLQMTLVELIKNPRYKLWSR 1693
TH F FIIL+LFSEA QEI+Q+QI RV+LERL+V RPHPWGL +T +ELIKNPRY W+R
Sbjct: 2305 THYFSFIILYLFSEANQEIVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYSFWAR 2364
Query: 1694 PFIRCGPQIDKVL 1706
F RC P+I+K+
Sbjct: 2365 SFTRCAPEIEKLF 2377
Score = 184 bits (466), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 128/221 (57%), Gaps = 19/221 (8%)
Query: 1261 DEEITESFPLQKKQREAAGSAYCDAFTHAQG-------------RFAHEPEALHPKHEHL 1307
D+++ PL K+ A AFT A G P + H
Sbjct: 1835 DKKVLSGRPLVNKEENNANDV---AFTDAVGFQEKVAVSFSEWCNICDHPTMGDSAYTHY 1891
Query: 1308 SVAQQVTMFMYGRAIANMLTLHVLVSLELAVKHSLVPNQIVATGGVSQKSSQQLKISYFP 1367
V Q + G + + H+L ELAV HS+V Q+VA GG+SQ+ +QQL+ISYF
Sbjct: 1892 IVKLQQDGLLKGDDLTDRF-YHILT--ELAVAHSVVSEQVVAPGGISQQPTQQLQISYFS 1948
Query: 1368 IDSFSKLVAMVLKYSSAETGPNKCSLLPKILLVAVRIIQRDSEEKKASFNPRPYFRLFIX 1427
IDS+SKLVA+V+KYSS + GP+K SL KIL V VRIIQRD+EEKK SFNPRPYFRLFI
Sbjct: 1949 IDSYSKLVALVVKYSSVDIGPSKGSLFNKILSVIVRIIQRDAEEKKVSFNPRPYFRLFIN 2008
Query: 1428 XXXXXXXXXXXXXGANFQVLIAFANAFHALQPLRIPSWSFC 1468
ANFQVL AFANAFH LQPLR+P+WSF
Sbjct: 2009 LLSELTTSDLHHDSANFQVLTAFANAFHVLQPLRVPAWSFA 2049
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 51,453,416
Number of extensions: 1982379
Number of successful extensions: 4221
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4211
Number of HSP's successfully gapped: 7
Length of query: 1729
Length of database: 17,035,801
Length adjustment: 115
Effective length of query: 1614
Effective length of database: 11,031,191
Effective search space: 17804342274
Effective search space used: 17804342274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 163 (67.4 bits)