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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0102300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CCR4-Not complex component, Not1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.121) R2 : -14.8
β1 : -0.462 (0.446) R2dD : -0.229 R2D : -0.0298
β2 : 0.346 (0.314) R2dC : 0.0261 R2C : 0.0239
β3 : -0.773 (0.351) R2dE : -0.286 R2E : -0.199
β4 : -0.142 (1.44) R2dD*C : 0.00184 R2D*C : -0.0139
β5 : -24.2 (1.2) R2dD*E : -14.6 R2D*E : -14.3
γ1 : 0.0948 (0.262) R2dN8 : 0.0345 R2N8 : 0.0108
σ : 0.477
deviance : 103.04
__
_____
C
peak time of C : 6.04
E
wheather : wind
threshold : 5
memory length : 7
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.04 0.477 3.32 -0.462 0.346 -0.773 -0.142 -24.2 0.0948 6.04 5 7 23 1
137.61 0.551 3.33 -0.0829 0.334 -0.405 -0.245 -- 0.226 4.61 3.42 36 0.182 1.23
138.22 0.552 3.34 -0.0849 0.342 -0.212 -- 0.0552 0.196 4.41 9.191 25 0.0193 1.57
137.75 0.55 3.33 -0.0812 0.334 -0.391 -- -- 0.226 4.79 3.42 36 0.182 1.23
143.59 0.561 3.33 -0.0673 -- -0.296 -- 0.0985 0.228 -- 28.96 2 0.0179 1.31
138.77 0.552 3.33 -0.0818 0.322 -- -0.185 -- 0.195 4.91 -- -- -- --
138.84 0.552 3.33 -0.081 0.321 -- -- -- 0.196 5.05 -- -- -- --
143.59 0.561 3.33 -0.0689 -- -0.304 -- -- 0.228 -- 3.42 36 0.182 1.23
137.93 0.55 3.33 -- 0.332 -0.391 -- -- 0.235 4.8 13.1 23 0.255 0.998
144.27 0.561 3.34 -0.0694 -- -- -- -- 0.205 -- -- -- -- --
139.02 0.552 3.33 -- 0.32 -- -- -- 0.205 5.05 -- -- -- --
136.33 0.544 3.34 -- -- 0.309 -- -- 0.216 -- 37.08 846 21.6 1.2
144.39 0.561 3.34 -- -- -- -- -- 0.212 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.36 radiation 40.0 43200 < th dose dependent rect. 23 1
3 103.04 wind 9.0 1440 < th dose independent rect. 23 1
4 103.04 temperature 10.0 1440 > th dose independent rect. 23 1
7 103.04 temperature 30.0 1440 < th dose independent rect. 23 1
11 103.04 humidity 50.0 1440 > th dose independent rect. 23 1
21 103.04 atmosphere 995.0 1440 > th dose independent rect. 23 1
22 103.04 radiation 1.0 1440 < th dose independent rect. 23 1
42 103.04 temperature 10.0 1440 > th dose independent rect. 24 23
45 103.04 radiation 1.0 1440 < th dose dependent rect. 23 1
51 103.22 temperature 25.0 30 > th dose independent rect. 22 1
55 103.49 humidity 90.0 30 < th dose independent rect. 22 1
56 103.50 temperature 20.0 30 > th dose dependent rect. 22 1
57 103.51 atmosphere 1005.0 30 > th dose dependent rect. 22 1
59 103.81 wind 3.0 30 < th dose independent rect. 22 1
64 104.05 atmosphere 1005.0 30 > th dose independent rect. 22 1
68 104.21 humidity 80.0 30 > th dose independent rect. 22 1
69 104.30 precipitation 0.1 30 < th dose independent rect. 22 1
70 104.30 precipitation 0.1 30 < th dose dependent rect. 22 1
71 104.40 wind 7.0 30 < th dose dependent rect. 22 1
74 104.49 wind 1.0 30 > th dose independent rect. 22 1
78 104.54 temperature 10.0 30 > th dose independent rect. 22 1
80 104.54 temperature 30.0 30 < th dose independent rect. 22 1
81 104.54 humidity 50.0 30 > th dose independent rect. 22 1
84 104.54 atmosphere 995.0 30 > th dose independent rect. 22 1
85 104.54 atmosphere 1010.0 30 < th dose independent rect. 22 1
87 104.54 radiation 1.0 30 < th dose independent rect. 22 1
92 104.54 temperature 10.0 30 > th dose independent rect. 23 23
93 104.54 radiation 1.0 30 < th dose dependent rect. 22 1
99 104.80 humidity 90.0 30 < th dose dependent rect. 22 1
100 104.81 humidity 50.0 30 > th dose dependent rect. 22 1
106 105.74 atmosphere 1015.0 30 < th dose dependent rect. 22 1
109 106.06 wind 1.0 30 > th dose dependent rect. 22 1
115 107.45 temperature 30.0 30 < th dose dependent rect. 22 1
116 107.84 wind 9.0 30 < th dose independent rect. 23 23
163 114.73 atmosphere 995.0 30 > th dose independent rect. 23 23
178 118.27 precipitation 0.1 30 < th dose independent rect. 23 23
179 118.27 precipitation 0.1 30 < th dose dependent rect. 23 23
193 121.70 temperature 25.0 10 > th dose independent rect. 22 8
204 123.62 humidity 50.0 30 > th dose independent rect. 23 23
212 124.91 precipitation 0.1 1440 < th dose independent rect. 23 1
213 124.91 precipitation 0.1 1440 < th dose dependent rect. 23 1
216 125.23 atmosphere 1015.0 30 < th dose independent rect. 23 23
220 125.73 temperature 10.0 30 > th dose dependent rect. 23 23
226 126.21 atmosphere 1005.0 10 > th dose dependent rect. 4 1
227 126.23 temperature 30.0 30 < th dose independent rect. 23 23
228 126.24 temperature 25.0 90 > th dose dependent rect. 21 8
230 126.29 humidity 90.0 10 < th dose independent rect. 4 1
232 126.33 temperature 25.0 90 > th dose dependent rect. 4 1
233 126.36 temperature 25.0 10 > th dose independent rect. 4 1
240 126.62 wind 1.0 30 > th dose independent rect. 4 1
247 127.22 wind 1.0 30 > th dose dependent rect. 4 1
248 127.27 temperature 25.0 720 > th dose dependent rect. 21 2
251 127.50 temperature 25.0 10 > th dose dependent rect. 22 8
261 127.90 atmosphere 1005.0 10 > th dose independent rect. 4 1
265 127.97 wind 3.0 10 < th dose independent rect. 4 1
266 127.99 wind 9.0 10 < th dose independent rect. 5 23
274 128.19 humidity 80.0 10 > th dose independent rect. 4 1
275 128.20 precipitation 0.1 10 < th dose independent rect. 4 1
276 128.20 precipitation 0.1 10 < th dose dependent rect. 4 1
278 128.26 temperature 10.0 10 > th dose independent rect. 4 1
280 128.26 temperature 30.0 10 < th dose independent rect. 4 1
281 128.26 humidity 50.0 10 > th dose independent rect. 4 1
284 128.26 atmosphere 995.0 10 > th dose independent rect. 4 1
285 128.26 atmosphere 1010.0 10 < th dose independent rect. 4 1
287 128.26 radiation 1.0 10 < th dose independent rect. 4 1
292 128.26 temperature 10.0 10 > th dose independent rect. 5 23
293 128.26 radiation 10.0 10 < th dose dependent rect. 4 1
297 128.28 wind 9.0 10 < th dose dependent rect. 4 1
350 128.56 humidity 50.0 10 > th dose dependent rect. 4 1
354 128.64 temperature 25.0 90 > th dose independent rect. 2 3
357 128.66 temperature 30.0 30 < th dose dependent rect. 4 1
372 128.83 atmosphere 1015.0 30 < th dose dependent rect. 4 1
435 129.66 wind 7.0 1440 < th dose independent rect. 5 1
437 129.66 temperature 10.0 1440 > th dose independent rect. 5 1
440 129.66 temperature 30.0 1440 < th dose independent rect. 5 1
444 129.66 humidity 50.0 1440 > th dose independent rect. 5 1
453 129.66 atmosphere 995.0 1440 > th dose independent rect. 5 1
454 129.66 atmosphere 1015.0 1440 < th dose independent rect. 5 1
455 129.66 radiation 20.0 1440 < th dose independent rect. 5 1
464 129.66 temperature 10.0 1440 > th dose independent rect. 6 23
488 130.22 atmosphere 995.0 30 > th dose independent rect. 5 23
498 130.37 temperature 10.0 720 > th dose dependent rect. 5 6
521 130.58 humidity 90.0 90 < th dose dependent rect. 4 1
532 130.68 humidity 90.0 10 < th dose dependent rect. 4 1
559 130.91 wind 1.0 30 > th dose independent rect. 23 23
562 130.93 temperature 15.0 90 > th dose dependent rect. 5 16
566 131.00 temperature 25.0 270 > th dose independent rect. 1 1
576 131.07 temperature 25.0 270 > th dose dependent rect. 19 10
603 131.14 temperature 25.0 720 > th dose independent rect. 22 1
606 131.15 temperature 25.0 720 > th dose independent rect. 20 3
640 131.38 temperature 10.0 720 > th dose dependent rect. 23 12
683 131.67 temperature 25.0 14400 > th dose dependent rect. 4 1
691 131.70 wind 9.0 30 < th dose dependent rect. 23 23
698 131.75 humidity 90.0 10 < th dose independent rect. 22 7
744 132.02 temperature 25.0 14400 > th dose independent rect. 4 1
756 132.08 precipitation 0.1 30 < th dose independent rect. 5 23
758 132.08 precipitation 0.1 30 < th dose dependent rect. 5 23
773 132.18 atmosphere 1015.0 720 < th dose independent rect. 23 12
782 132.23 temperature 25.0 720 > th dose independent rect. 5 6
805 132.35 temperature 25.0 90 > th dose independent rect. 6 15
840 132.48 atmosphere 1015.0 720 < th dose independent rect. 3 8
850 132.50 radiation 1.0 14400 < th dose independent rect. 18 11
861 132.57 radiation 10.0 4320 < th dose independent rect. 16 1
872 132.60 temperature 25.0 720 > th dose independent rect. 8 3
873 132.60 humidity 90.0 10 < th dose independent rect. 2 3
882 132.63 radiation 1.0 14400 < th dose independent rect. 18 6
885 132.64 radiation 1.0 14400 < th dose independent rect. 18 1
908 132.68 radiation 1.0 14400 > th dose independent rect. 18 11
909 132.68 atmosphere 1000.0 30 > th dose dependent rect. 22 7
946 132.85 radiation 1.0 14400 > th dose independent rect. 18 1
966 132.88 temperature 30.0 720 < th dose dependent rect. 4 5
973 132.89 radiation 1.0 1440 < th dose dependent rect. 18 6
978 132.92 radiation 1.0 1440 < th dose dependent rect. 18 1
991 132.96 radiation 40.0 14400 < th dose dependent rect. 18 6