BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0833600 Os02g0833600|AK061086
         (142 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0833600  Similar to Basic leucine zipper transcription ...   205   9e-54
Os06g0724000  Similar to Abscisic acid responsive elements-b...   101   2e-22
Os06g0719500  Similar to TGACG-sequence specific DNA-binding...    83   7e-17

>Os02g0833600 Similar to Basic leucine zipper transcription factor (Fragment)
          Length = 142

 Score =  205 bits (521), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 109/142 (76%), Positives = 109/142 (76%)

Query: 1   MAEQLGGVGXXXXXXXXXXXXXXXXXAGTSAADGAPHLSLGVGGAEELDLLLQVXXXXXX 60
           MAEQLGGVG                 AGTSAADGAPHLSLGVGGAEELDLLLQV      
Sbjct: 1   MAEQLGGVGSPQLSLSSCSSFLSISSAGTSAADGAPHLSLGVGGAEELDLLLQVGIGGGG 60

Query: 61  XXXXXXXXXXRKTIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRHCKQLKT 120
                     RKTIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRHCKQLKT
Sbjct: 61  GGGGDEEEEERKTIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRHCKQLKT 120

Query: 121 EMAALIQQPTNKQSSHRRSSST 142
           EMAALIQQPTNKQSSHRRSSST
Sbjct: 121 EMAALIQQPTNKQSSHRRSSST 142



>Os06g0724000 Similar to Abscisic acid responsive elements-binding factor
          Length = 167

 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 64/72 (88%), Gaps = 3/72 (4%)

Query: 71  RKTIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRHCKQLKTEMAALIQQPT 130
           R+TIRMM+NRESALRSRARKRAYV+ELEKEVRRLV++NL LK+ CK+LK E+AAL+  PT
Sbjct: 97  RRTIRMMRNRESALRSRARKRAYVEELEKEVRRLVDDNLNLKKQCKELKQEVAALV-MPT 155

Query: 131 NKQSSHRRSSST 142
             +SS RR+SST
Sbjct: 156 --KSSLRRTSST 165



>Os06g0719500 Similar to TGACG-sequence specific DNA-binding protein TGA-1B
           (TGA1b) (HSBF) (Fragment)
          Length = 154

 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 45/47 (95%)

Query: 71  RKTIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRHCKQ 117
           R+TIRMM+NRESALRSRARKRAYV+ELEKEVRRLV++NL LK+ CK+
Sbjct: 97  RRTIRMMRNRESALRSRARKRAYVEELEKEVRRLVDDNLNLKKQCKE 143



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.126    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,124,227
Number of extensions: 81471
Number of successful extensions: 464
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 3
Length of query: 142
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 51
Effective length of database: 12,284,327
Effective search space: 626500677
Effective search space used: 626500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 151 (62.8 bits)