BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0832800 Os02g0832800|AK101526
(442 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0832800 Similar to Alpha-1,3-mannosyl-glycoprotein bet... 874 0.0
>Os02g0832800 Similar to Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-
acetylglucosaminyltransferase (EC 2.4.1.101)
Length = 442
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/442 (96%), Positives = 425/442 (96%)
Query: 1 MARSPCDLRILLVAAAAAFIYIQVRLFSTQSHYADRLAQAEKSENQCTSQLRSLIDQVSS 60
MARSPCDLRILLVAAAAAFIYIQVRLFSTQSHYADRLAQAEKSENQCTSQLRSLIDQVSS
Sbjct: 1 MARSPCDLRILLVAAAAAFIYIQVRLFSTQSHYADRLAQAEKSENQCTSQLRSLIDQVSS 60
Query: 61 QQEKIVALEEMKIRQDEERVHLKILIQDLEKRSVQTLXXXXXXXXXXXXXXXXXRPDYLQ 120
QQEKIVALEEMKIRQDEERVHLKILIQDLEKRSVQTL RPDYLQ
Sbjct: 61 QQEKIVALEEMKIRQDEERVHLKILIQDLEKRSVQTLVNNNVAPVAAVVVMACNRPDYLQ 120
Query: 121 RTVESILKYQTSVASKFPLFISQDGINGEVKKKALSYNEITYMQHLDLEPVRTERPGELI 180
RTVESILKYQTSVASKFPLFISQDGINGEVKKKALSYNEITYMQHLDLEPVRTERPGELI
Sbjct: 121 RTVESILKYQTSVASKFPLFISQDGINGEVKKKALSYNEITYMQHLDLEPVRTERPGELI 180
Query: 181 AYYKIAKHYKWALDELFIKHNFARVIILEDDMEIAPDFFDYFEAAAKLLDNDKTIMAVSS 240
AYYKIAKHYKWALDELFIKHNFARVIILEDDMEIAPDFFDYFEAAAKLLDNDKTIMAVSS
Sbjct: 181 AYYKIAKHYKWALDELFIKHNFARVIILEDDMEIAPDFFDYFEAAAKLLDNDKTIMAVSS 240
Query: 241 WNDNGQKQFVYDPKALYRSDFFPGLGWMLTKPTWIELSPKWPKAYWDDWVRLKEVHRDRQ 300
WNDNGQKQFVYDPKALYRSDFFPGLGWMLTKPTWIELSPKWPKAYWDDWVRLKEVHRDRQ
Sbjct: 241 WNDNGQKQFVYDPKALYRSDFFPGLGWMLTKPTWIELSPKWPKAYWDDWVRLKEVHRDRQ 300
Query: 301 FIRPEVCRTYNFGEHGSSMGQFFRQYLEPIKLNDAHIKWNSEDLSYLKEDKFLIQFGKDV 360
FIRPEVCRTYNFGEHGSSMGQFFRQYLEPIKLNDAHIKWNSEDLSYLKEDKFLIQFGKDV
Sbjct: 301 FIRPEVCRTYNFGEHGSSMGQFFRQYLEPIKLNDAHIKWNSEDLSYLKEDKFLIQFGKDV 360
Query: 361 ASATPLHGSDAALKAHNMDADVRIQYNDQEDFERIARQFGIFEEWKDGIPRTAYKGVVVF 420
ASATPLHGSDAALKAHNMDADVRIQYNDQEDFERIARQFGIFEEWKDGIPRTAYKGVVVF
Sbjct: 361 ASATPLHGSDAALKAHNMDADVRIQYNDQEDFERIARQFGIFEEWKDGIPRTAYKGVVVF 420
Query: 421 RYKSSRRRIYLVGPDSLSQLRV 442
RYKSSRRRIYLVGPDSLSQLRV
Sbjct: 421 RYKSSRRRIYLVGPDSLSQLRV 442
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,934,377
Number of extensions: 567170
Number of successful extensions: 1225
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1224
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 338
Effective length of database: 11,605,545
Effective search space: 3922674210
Effective search space used: 3922674210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)