BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0831200 Os02g0831200|AK061847
(309 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0831200 Protein of unknown function DUF177 family protein 490 e-139
Os04g0108100 Protein of unknown function DUF177 family protein 231 6e-61
>Os02g0831200 Protein of unknown function DUF177 family protein
Length = 309
Score = 490 bits (1261), Expect = e-139, Method: Compositional matrix adjust.
Identities = 260/309 (84%), Positives = 260/309 (84%)
Query: 1 GFGIGGVAGAXXXXXXXXXXXXXXXXXXXXXXHHTCSFFFRPQPSPSLSHSPCXXXXXXX 60
GFGIGGVAGA HHTCSFFFRPQPSPSLSHSPC
Sbjct: 1 GFGIGGVAGALPLVLRRTRTCTPPPPMAMTPLHHTCSFFFRPQPSPSLSHSPCAAAADDD 60
Query: 61 FFTVDYDPXXXXXXXXXGSPWEGAVVYRRDASVHHLEYATTLERLGLGDLSSTHSRARAA 120
FFTVDYDP GSPWEGAVVYRRDASVHHLEYATTLERLGLGDLSSTHSRARAA
Sbjct: 61 FFTVDYDPEEEKEEDEEGSPWEGAVVYRRDASVHHLEYATTLERLGLGDLSSTHSRARAA 120
Query: 121 TMGILILSSTNLTGTKDDDTPVLVSLDVARRRGRLRLDGIVRTVITLGCYGCAEPAPQGI 180
TMGILILSSTNLTGTKDDDTPVLVSLDVARRRGRLRLDGIVRTVITLGCYGCAEPAPQGI
Sbjct: 121 TMGILILSSTNLTGTKDDDTPVLVSLDVARRRGRLRLDGIVRTVITLGCYGCAEPAPQGI 180
Query: 181 FANFSLLLTEDRVEEPDVVDLGTIFEEEQTKAPSLTGSQEXXXXXXXXXXXRLHFPAGEK 240
FANFSLLLTEDRVEEPDVVDLGTIFEEEQTKAPSLTGSQE RLHFPAGEK
Sbjct: 181 FANFSLLLTEDRVEEPDVVDLGTIFEEEQTKAPSLTGSQEDGDDEDIDWDDRLHFPAGEK 240
Query: 241 EIDISKHIRDIIHLEITLDALCSPTCKGLCLGCGENLNTSSCSCNAEKQQAKNVQRRGPL 300
EIDISKHIRDIIHLEITLDALCSPTCKGLCLGCGENLNTSSCSCNAEKQQAKNVQRRGPL
Sbjct: 241 EIDISKHIRDIIHLEITLDALCSPTCKGLCLGCGENLNTSSCSCNAEKQQAKNVQRRGPL 300
Query: 301 KDLLKPLQR 309
KDLLKPLQR
Sbjct: 301 KDLLKPLQR 309
>Os04g0108100 Protein of unknown function DUF177 family protein
Length = 206
Score = 231 bits (589), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 114/132 (86%), Positives = 116/132 (87%), Gaps = 2/132 (1%)
Query: 172 CAEPAPQGIFANFSLLLTEDRVEEPDVVDLGTIFEEEQTKAPSLTGSQEXXXXXXXXXXX 231
CAEPAPQGIFANFSLLLTE RVEEPDVVDLGTIFEEEQTKAP LTGSQE
Sbjct: 65 CAEPAPQGIFANFSLLLTEGRVEEPDVVDLGTIFEEEQTKAPVLTGSQEDGDDEDIDWDD 124
Query: 232 RLHFPAGEKEIDISKHIRDIIHLEITLDALCSPTCKGLCLGCGENLNTSSCSCNAEKQQ- 290
RLHFPAGEKE+DISKHIRDIIHLEITLDALCSPTCKGLC+GCGENLNTSSCSCN EKQQ
Sbjct: 125 RLHFPAGEKEVDISKHIRDIIHLEITLDALCSPTCKGLCVGCGENLNTSSCSCNTEKQQA 184
Query: 291 -AKNVQRRGPLK 301
AKNVQRRGPLK
Sbjct: 185 KAKNVQRRGPLK 196
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,123,516
Number of extensions: 343105
Number of successful extensions: 692
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 208
Effective length of database: 11,762,187
Effective search space: 2446534896
Effective search space used: 2446534896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)