BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0827300 Os02g0827300|AK069159
(582 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0827300 Protein of unknown function DUF382 domain cont... 820 0.0
>Os02g0827300 Protein of unknown function DUF382 domain containing protein
Length = 582
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/552 (76%), Positives = 420/552 (76%)
Query: 11 PDLPNGSSATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPD 70
PDLPNGSSATATT PD
Sbjct: 11 PDLPNGSSATATTDKKKSRESERRRRRRKQKKNKAASNAADADAAGDAGADDDAAEEKPD 70
Query: 71 VKXXXXXXXXXXXXXADLDDGLLADFKSIFDKFTFXXXXXXXXXXXXXXXXXXXXXXXXX 130
VK ADLDDGLLADFKSIFDKFTF
Sbjct: 71 VKPQVEVEVEYVPEQADLDDGLLADFKSIFDKFTFKDSSADAEDDEKKDEAGTDAAKKAA 130
Query: 131 XXXXXXXXQGTQQKKEGGLSNKQKKLQRRMKIAELKQICNRPDVVEVWDATASDPSLLVY 190
QGTQQKKEGGLSNKQKKLQRRMKIAELKQICNRPDVVEVWDATASDPSLLVY
Sbjct: 131 GSDSDDDEQGTQQKKEGGLSNKQKKLQRRMKIAELKQICNRPDVVEVWDATASDPSLLVY 190
Query: 191 LKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLK 250
LKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLK
Sbjct: 191 LKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLK 250
Query: 251 QKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYYEGKEFEVKLREMKPGMLS 310
QKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYYEGKEFEVKLREMKPGMLS
Sbjct: 251 QKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYYEGKEFEVKLREMKPGMLS 310
Query: 311 RELKEALGMPDGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPPGASFGYRPGEWGKPPV 370
RELKEALGMPDGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPPGASFGYRPGEWGKPPV
Sbjct: 311 RELKEALGMPDGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPPGASFGYRPGEWGKPPV 370
Query: 371 DEHGRPLYGDVFGVLQQDEPNYDEEPVDRSKHWGDLXXXXXXXXXXXXXXXXXXXXXXXX 430
DEHGRPLYGDVFGVLQQDEPNYDEEPVDRSKHWGDL
Sbjct: 371 DEHGRPLYGDVFGVLQQDEPNYDEEPVDRSKHWGDLEEEEEEEEEEEEEEEEEPMEDEDM 430
Query: 431 XXGMQSVDTISSTPTGVETPDVIDLRKLQRKEPEKQTEKQLYQILEQKEERIAPGAIYGS 490
GMQSVDTISSTPTGVETPDVIDLRKLQRKEPEKQTEKQLYQILEQKEERIAPGAIYGS
Sbjct: 431 EDGMQSVDTISSTPTGVETPDVIDLRKLQRKEPEKQTEKQLYQILEQKEERIAPGAIYGS 490
Query: 491 SHTYAIGAQDKAGPKRVDLLKNQKSDKVDVTIQPEELEVMDDVXXXXXXXXXXXXXXXNQ 550
SHTYAIGAQDKAGPKRVDLLKNQKSDKVDVTIQPEELEVMDDV NQ
Sbjct: 491 SHTYAIGAQDKAGPKRVDLLKNQKSDKVDVTIQPEELEVMDDVLAAKYEEAREEEKLRNQ 550
Query: 551 KEDFSDMVAENA 562
KEDFSDMVAENA
Sbjct: 551 KEDFSDMVAENA 562
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,862,981
Number of extensions: 692677
Number of successful extensions: 1781
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1779
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 476
Effective length of database: 11,501,117
Effective search space: 5474531692
Effective search space used: 5474531692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)