BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0817000 Os02g0817000|AK099758
         (872 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0817000  Myb, DNA-binding domain containing protein         1707   0.0  

>Os02g0817000 Myb, DNA-binding domain containing protein
          Length = 872

 Score = 1707 bits (4422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 831/872 (95%), Positives = 831/872 (95%)

Query: 1   MSSKFMITYKRKRVTSHVYTADGTNXXXXXXXXXXXXXXXXXXYGVGADNNMLEEDNFST 60
           MSSKFMITYKRKRVTSHVYTADGTN                  YGVGADNNMLEEDNFST
Sbjct: 1   MSSKFMITYKRKRVTSHVYTADGTNLKSSGASSSVPVSSLSPKYGVGADNNMLEEDNFST 60

Query: 61  STKQQDVFDSREQVIKEESPKQSANAPGKERAELKSRESLSQKEQPEICSTHTAIGDACE 120
           STKQQDVFDSREQVIKEESPKQSANAPGKERAELKSRESLSQKEQPEICSTHTAIGDACE
Sbjct: 61  STKQQDVFDSREQVIKEESPKQSANAPGKERAELKSRESLSQKEQPEICSTHTAIGDACE 120

Query: 121 NKLECIDGTHNQSLVSSCVHADRTTNQAEDSSASVSVGVNSHQQPNNSTRPSQSKSRFSP 180
           NKLECIDGTHNQSLVSSCVHADRTTNQAEDSSASVSVGVNSHQQPNNSTRPSQSKSRFSP
Sbjct: 121 NKLECIDGTHNQSLVSSCVHADRTTNQAEDSSASVSVGVNSHQQPNNSTRPSQSKSRFSP 180

Query: 181 MLTFHRRVKNKIGLEEPAAGSCSRDNDKHCSKLSCNPPSSPLDAIPLCRQTAGSSLDVED 240
           MLTFHRRVKNKIGLEEPAAGSCSRDNDKHCSKLSCNPPSSPLDAIPLCRQTAGSSLDVED
Sbjct: 181 MLTFHRRVKNKIGLEEPAAGSCSRDNDKHCSKLSCNPPSSPLDAIPLCRQTAGSSLDVED 240

Query: 241 KVTIAGTSTGQSVIVDHLLEQKSSHIPKSSVHHMVPSQPAKDANQSSIPEEGTPVSEFTR 300
           KVTIAGTSTGQSVIVDHLLEQKSSHIPKSSVHHMVPSQPAKDANQSSIPEEGTPVSEFTR
Sbjct: 241 KVTIAGTSTGQSVIVDHLLEQKSSHIPKSSVHHMVPSQPAKDANQSSIPEEGTPVSEFTR 300

Query: 301 VLETSESDARVEDSNRTPVDAIEVPKVIEVKRDEHGNGQTNCLQSPRKNINVNLLKPTNR 360
           VLETSESDARVEDSNRTPVDAIEVPKVIEVKRDEHGNGQTNCLQSPRKNINVNLLKPTNR
Sbjct: 301 VLETSESDARVEDSNRTPVDAIEVPKVIEVKRDEHGNGQTNCLQSPRKNINVNLLKPTNR 360

Query: 361 SEAADLLESQDSTKNIPIIVLDDDSDERGKEQEKSEVLDQLIQEKNKGRFSLGQINLNLN 420
           SEAADLLESQDSTKNIPIIVLDDDSDERGKEQEKSEVLDQLIQEKNKGRFSLGQINLNLN
Sbjct: 361 SEAADLLESQDSTKNIPIIVLDDDSDERGKEQEKSEVLDQLIQEKNKGRFSLGQINLNLN 420

Query: 421 CAELPQERLLSLDETSVYKLKDQDQCVHERKQMSHPVERLFFTKEKDAMHGKKHHEETST 480
           CAELPQERLLSLDETSVYKLKDQDQCVHERKQMSHPVERLFFTKEKDAMHGKKHHEETST
Sbjct: 421 CAELPQERLLSLDETSVYKLKDQDQCVHERKQMSHPVERLFFTKEKDAMHGKKHHEETST 480

Query: 481 MHSSYSNLFDPAPSSSWITGNFKEPSVMPSELKFRILDKAPEFNLDLKLDSFPDSSVLAL 540
           MHSSYSNLFDPAPSSSWITGNFKEPSVMPSELKFRILDKAPEFNLDLKLDSFPDSSVLAL
Sbjct: 481 MHSSYSNLFDPAPSSSWITGNFKEPSVMPSELKFRILDKAPEFNLDLKLDSFPDSSVLAL 540

Query: 541 RHDKLFRGGTSSGSHFLTERLGTYSYKRHSSPWSEEELDFLWIGVRRYGTNNWNAMLRDR 600
           RHDKLFRGGTSSGSHFLTERLGTYSYKRHSSPWSEEELDFLWIGVRRYGTNNWNAMLRDR
Sbjct: 541 RHDKLFRGGTSSGSHFLTERLGTYSYKRHSSPWSEEELDFLWIGVRRYGTNNWNAMLRDR 600

Query: 601 RLRFSNSRNAEDLAKQWDKEQRNLLGVDFLQSLRSSARGPPPPSHIPEDYVGSSSWTGCS 660
           RLRFSNSRNAEDLAKQWDKEQRNLLGVDFLQSLRSSARGPPPPSHIPEDYVGSSSWTGCS
Sbjct: 601 RLRFSNSRNAEDLAKQWDKEQRNLLGVDFLQSLRSSARGPPPPSHIPEDYVGSSSWTGCS 660

Query: 661 KSPFLSAPTDLSLGDMYLRSARTSERGQHHLSNLGMLNLHATDNVPRNLSLGGFPVASSP 720
           KSPFLSAPTDLSLGDMYLRSARTSERGQHHLSNLGMLNLHATDNVPRNLSLGGFPVASSP
Sbjct: 661 KSPFLSAPTDLSLGDMYLRSARTSERGQHHLSNLGMLNLHATDNVPRNLSLGGFPVASSP 720

Query: 721 YGXXXXXXXXXXXLPKSYYDNKAVWCQDPSERVAQFLPINQEPINNLPEWLTKDAEMAGV 780
           YG           LPKSYYDNKAVWCQDPSERVAQFLPINQEPINNLPEWLTKDAEMAGV
Sbjct: 721 YGRSSSKRRRASKLPKSYYDNKAVWCQDPSERVAQFLPINQEPINNLPEWLTKDAEMAGV 780

Query: 781 RRLDADLWPSMQAPGHSAADRLNEMKPHVLPDGSLKRAPKRKAEWRAFSKKLFKSGDGAL 840
           RRLDADLWPSMQAPGHSAADRLNEMKPHVLPDGSLKRAPKRKAEWRAFSKKLFKSGDGAL
Sbjct: 781 RRLDADLWPSMQAPGHSAADRLNEMKPHVLPDGSLKRAPKRKAEWRAFSKKLFKSGDGAL 840

Query: 841 DLNQRXXXXXXXXXXXXTSDTGASSEETVSDS 872
           DLNQR            TSDTGASSEETVSDS
Sbjct: 841 DLNQRAAAIAGPLGAIGTSDTGASSEETVSDS 872



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.127    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,559,213
Number of extensions: 1359845
Number of successful extensions: 3423
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3422
Number of HSP's successfully gapped: 1
Length of query: 872
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 762
Effective length of database: 11,292,261
Effective search space: 8604702882
Effective search space used: 8604702882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)