Os02g0817000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myb, DNA-binding domain containing protein.
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Os02g0817000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myb, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.05 | 0.2 | 9.84 | 0.0663 | 1 | 0.626 | -0.253 | 1.01 | -0.194 | 5.6 | 10.04 | 11 | -- | -- |
| 18.88 | 0.204 | 9.85 | -0.0683 | 0.992 | 0.632 | -0.416 | -- | -0.231 | 5.59 | 14.38 | 18 | -- | -- |
| 18.19 | 0.199 | 9.83 | 0.0778 | 1 | 0.641 | -- | 1.13 | -0.191 | 5.58 | 9.868 | 11 | -- | -- |
| 19.2 | 0.204 | 9.85 | -0.0659 | 1 | 0.545 | -- | -- | -0.232 | 5.57 | 18.83 | 11 | -- | -- |
| 51.71 | 0.335 | 9.8 | 0.533 | -- | -0.805 | -- | 3.22 | -0.0456 | -- | 25.06 | 372 | -- | -- |
| 22.75 | 0.224 | 9.83 | 0.057 | 0.885 | -- | -0.503 | -- | -0.142 | 6.16 | -- | -- | -- | -- |
| 23.38 | 0.226 | 9.83 | 0.0519 | 0.883 | -- | -- | -- | -0.14 | 6.19 | -- | -- | -- | -- |
| 55.88 | 0.348 | 9.84 | 0.16 | -- | -0.524 | -- | -- | -0.0813 | -- | 24.9 | 373 | -- | -- |
| 19.3 | 0.205 | 9.85 | -- | 0.997 | 0.516 | -- | -- | -0.222 | 5.59 | 19.25 | 11 | -- | -- |
| 63.79 | 0.373 | 9.85 | 0.0764 | -- | -- | -- | -- | -0.121 | -- | -- | -- | -- | -- |
| 23.45 | 0.227 | 9.83 | -- | 0.884 | -- | -- | -- | -0.146 | 6.19 | -- | -- | -- | -- |
| 56.53 | 0.35 | 9.84 | -- | -- | -0.502 | -- | -- | -0.103 | -- | 25 | 372 | -- | -- |
| 63.95 | 0.373 | 9.85 | -- | -- | -- | -- | -- | -0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 7 | 17.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 8 | 17.90 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 9 | 17.91 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 14 | 17.95 | temperature | 20 | 90 | > th | dose dependent | sin | 8 | NA |
| 15 | 17.95 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 17 | 17.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 26 | 18.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 35 | 18.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 39 | 18.05 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 47 | 18.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 53 | 18.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 58 | 18.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 85 | 18.17 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 95 | 18.18 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 122 | 18.23 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 127 | 18.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 128 | 18.25 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 132 | 18.25 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 134 | 18.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 145 | 18.27 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 158 | 18.28 | temperature | 30 | 30 | < th | dose dependent | sin | 8 | NA |
| 163 | 18.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 165 | 18.29 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 177 | 18.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 207 | 18.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 210 | 18.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 248 | 18.36 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 250 | 18.36 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 251 | 18.36 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 256 | 18.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 266 | 18.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 268 | 18.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 289 | 18.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 316 | 18.41 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 324 | 18.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 339 | 18.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 340 | 18.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 356 | 18.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 363 | 18.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 371 | 18.44 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 425 | 18.46 | temperature | 25 | 10 | > th | dose independent | rect. | 13 | 23 |
| 456 | 18.47 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 5 |
| 485 | 18.48 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 556 | 18.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 613 | 18.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 617 | 18.53 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 653 | 18.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 696 | 18.54 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 746 | 18.56 | temperature | 25 | 30 | < th | dose independent | rect. | 22 | 22 |
| 811 | 18.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 831 | 18.58 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 853 | 18.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 906 | 18.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 21 |
| 928 | 18.60 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 20 |