BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0815400 Os02g0815400|AK061270
         (307 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0815400  Similar to Tfm5 protein                             485   e-137

>Os02g0815400 Similar to Tfm5 protein
          Length = 307

 Score =  485 bits (1249), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/275 (88%), Positives = 243/275 (88%)

Query: 33  HLRRCRYPPPVFAXXXXXXXXXXXXXXGGDNPDEEPVLPLLQELADCLVLPPKFLSQLPR 92
           HLRRCRYPPPVFA              GGDNPDEEPVLPLLQELADCLVLPPKFLSQLPR
Sbjct: 33  HLRRCRYPPPVFAVSSDSPKPVTSSSTGGDNPDEEPVLPLLQELADCLVLPPKFLSQLPR 92

Query: 93  DLRLDLNDAAFDLSNGPVLDECGQEVGDLLLNLAKAWEMADTSTSNNLVKQLPSMEPYLT 152
           DLRLDLNDAAFDLSNGPVLDECGQEVGDLLLNLAKAWEMADTSTSNNLVKQLPSMEPYLT
Sbjct: 93  DLRLDLNDAAFDLSNGPVLDECGQEVGDLLLNLAKAWEMADTSTSNNLVKQLPSMEPYLT 152

Query: 153 GSAKSAFGKRLMSAGRRFTSMGQYGKGELKKIAETMSKTGKLLSKRPVVQSEVEAMKVXX 212
           GSAKSAFGKRLMSAGRRFTSMGQYGKGELKKIAETMSKTGKLLSKRPVVQSEVEAMKV  
Sbjct: 153 GSAKSAFGKRLMSAGRRFTSMGQYGKGELKKIAETMSKTGKLLSKRPVVQSEVEAMKVKR 212

Query: 213 XXXXXXXXXXXXXXXXNIGAAVGLVFGFLSWQLARGIQNIPDGSMQYANDNALQMAKSLK 272
                           NIGAAVGLVFGFLSWQLARGIQNIPDGSMQYANDNALQMAKSLK
Sbjct: 213 KLKFLELEFELTAEKANIGAAVGLVFGFLSWQLARGIQNIPDGSMQYANDNALQMAKSLK 272

Query: 273 VSLLVLGYTSTALSVFTSIGLLLLAQQINSDDKTE 307
           VSLLVLGYTSTALSVFTSIGLLLLAQQINSDDKTE
Sbjct: 273 VSLLVLGYTSTALSVFTSIGLLLLAQQINSDDKTE 307



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,069,826
Number of extensions: 281615
Number of successful extensions: 607
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)