Os02g0815400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tfm5 protein.
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Os02g0815400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tfm5 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.75 | 0.395 | 12.5 | -2.99 | 1.02 | -2.29 | 0.392 | 8.34 | -0.506 | 12.7 | 1000 | 137 | -- | -- |
| 71.45 | 0.397 | 12.4 | -2.44 | 1.01 | -0.792 | 0.358 | -- | -0.506 | 12.7 | 1000 | 137 | -- | -- |
| 71.4 | 0.394 | 12.5 | -2.98 | 1.02 | -2.28 | -- | 8.23 | -0.503 | 12.7 | 1000 | 131 | -- | -- |
| 71.99 | 0.398 | 12.4 | -2.42 | 1.01 | -0.796 | -- | -- | -0.504 | 12.7 | 1000 | 131 | -- | -- |
| 134.7 | 0.544 | 12.4 | -2.38 | -- | -0.684 | -- | -0.895 | -0.513 | -- | 1000 | 88 | -- | -- |
| 89.15 | 0.443 | 12.4 | -2.29 | 1.02 | -- | 0.405 | -- | -0.56 | 12.8 | -- | -- | -- | -- |
| 89.84 | 0.444 | 12.4 | -2.28 | 1.02 | -- | -- | -- | -0.558 | 12.8 | -- | -- | -- | -- |
| 133.85 | 0.541 | 12.4 | -2.44 | -- | -0.81 | -- | -- | -0.507 | -- | 1001 | 136 | -- | -- |
| 217.84 | 0.687 | 12.3 | -- | 1.05 | -0.479 | -- | -- | -0.234 | 12.9 | 1002 | 167 | -- | -- |
| 155.15 | 0.582 | 12.4 | -2.31 | -- | -- | -- | -- | -0.577 | -- | -- | -- | -- | -- |
| 226.42 | 0.704 | 12.3 | -- | 1.06 | -- | -- | -- | -0.305 | 12.9 | -- | -- | -- | -- |
| 285.03 | 0.786 | 12.3 | -- | -- | -0.524 | -- | -- | -0.244 | -- | 1003 | 160 | -- | -- |
| 296.34 | 0.804 | 12.4 | -- | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.14 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 2 | 61.18 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 4 |
| 3 | 61.97 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 7 | 63.71 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 8 | 63.78 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 22 | 65.51 | humidity | 80 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 32 | 66.34 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 39 | 66.51 | humidity | 80 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 44 | 66.63 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 45 | 66.69 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 53 | 67.05 | humidity | 80 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 59 | 67.19 | humidity | 80 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 60 | 67.20 | humidity | 80 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 64 | 67.28 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 81 | 67.51 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 107 | 67.84 | temperature | 25 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 108 | 67.86 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 109 | 67.88 | temperature | 25 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 115 | 67.94 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 121 | 68.01 | wind | 9 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 126 | 68.08 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 130 | 68.09 | wind | 9 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 148 | 68.23 | temperature | 30 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 151 | 68.26 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 154 | 68.30 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 174 | 68.33 | temperature | 30 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 177 | 68.36 | temperature | 30 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 187 | 68.44 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 218 | 68.47 | temperature | 30 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 239 | 68.60 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 249 | 68.63 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 255 | 68.68 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 306 | 68.86 | wind | 9 | 14400 | > th | dose independent | sin | 3 | NA |
| 312 | 68.86 | wind | 9 | 14400 | > th | dose dependent | rect. | 3 | 15 |
| 330 | 68.91 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 341 | 68.92 | wind | 9 | 14400 | > th | dose dependent | sin | 2 | NA |
| 413 | 69.10 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 15 |
| 423 | 69.14 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 435 | 69.15 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 15 |
| 501 | 69.33 | wind | 9 | 14400 | < th | dose independent | sin | 3 | NA |
| 503 | 69.33 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 540 | 69.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 560 | 69.40 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 562 | 69.41 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 6 |
| 566 | 69.41 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 18 |
| 599 | 69.50 | temperature | 30 | 43200 | > th | dose dependent | sin | 8 | NA |
| 610 | 69.52 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 632 | 69.56 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 18 |
| 633 | 69.56 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 661 | 69.62 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 21 |
| 698 | 69.72 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 755 | 69.81 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 20 |
| 759 | 69.84 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 768 | 69.86 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 786 | 69.89 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 831 | 69.98 | humidity | 80 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 850 | 69.99 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 862 | 70.01 | temperature | 30 | 43200 | < th | dose independent | sin | 10 | NA |
| 882 | 70.02 | temperature | 30 | 43200 | > th | dose independent | sin | 9 | NA |
| 894 | 70.03 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 895 | 70.04 | wind | 9 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 948 | 70.12 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 974 | 70.17 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 982 | 70.19 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 996 | 70.21 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 997 | 70.21 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 999 | 70.21 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 8 |