BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0809500 Os02g0809500|AK100684
(584 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0809500 Conserved hypothetical protein 1224 0.0
>Os02g0809500 Conserved hypothetical protein
Length = 584
Score = 1224 bits (3168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/584 (100%), Positives = 584/584 (100%)
Query: 1 MMSNGHSNSSKSLERFISRRALQMGSSAPCKTWALGFFCGVCIVYLFGVALPPIQILMIR 60
MMSNGHSNSSKSLERFISRRALQMGSSAPCKTWALGFFCGVCIVYLFGVALPPIQILMIR
Sbjct: 1 MMSNGHSNSSKSLERFISRRALQMGSSAPCKTWALGFFCGVCIVYLFGVALPPIQILMIR 60
Query: 61 SVHPPVRRAILLNSTSTEPGGATETDDLSVLQEKIEIATNSKDINEADKMHLYNAWSTLL 120
SVHPPVRRAILLNSTSTEPGGATETDDLSVLQEKIEIATNSKDINEADKMHLYNAWSTLL
Sbjct: 61 SVHPPVRRAILLNSTSTEPGGATETDDLSVLQEKIEIATNSKDINEADKMHLYNAWSTLL 120
Query: 121 DTTSDEVMKSSDVPRPPHLENCRLKWERNKKFDSYSDNGVFPPWTLWKGSLGLELFNQNY 180
DTTSDEVMKSSDVPRPPHLENCRLKWERNKKFDSYSDNGVFPPWTLWKGSLGLELFNQNY
Sbjct: 121 DTTSDEVMKSSDVPRPPHLENCRLKWERNKKFDSYSDNGVFPPWTLWKGSLGLELFNQNY 180
Query: 181 SDSEEWRQMFFRSNAKSDRAPYPPWIAGSDEENYPLTRQVQRDVWIHQHPPNCSDPSLRF 240
SDSEEWRQMFFRSNAKSDRAPYPPWIAGSDEENYPLTRQVQRDVWIHQHPPNCSDPSLRF
Sbjct: 181 SDSEEWRQMFFRSNAKSDRAPYPPWIAGSDEENYPLTRQVQRDVWIHQHPPNCSDPSLRF 240
Query: 241 LYADWERLPGFGIGAQLAGMSGLLAIAIKERRILVAGYYNRADHNGCKGLARSSWSCYFL 300
LYADWERLPGFGIGAQLAGMSGLLAIAIKERRILVAGYYNRADHNGCKGLARSSWSCYFL
Sbjct: 241 LYADWERLPGFGIGAQLAGMSGLLAIAIKERRILVAGYYNRADHNGCKGLARSSWSCYFL 300
Query: 301 PETSADCQKRALDLMQSKDSRENGIIKVKENYTSKQIWAGHIPRIWGRPWKYMQPTTEID 360
PETSADCQKRALDLMQSKDSRENGIIKVKENYTSKQIWAGHIPRIWGRPWKYMQPTTEID
Sbjct: 301 PETSADCQKRALDLMQSKDSRENGIIKVKENYTSKQIWAGHIPRIWGRPWKYMQPTTEID 360
Query: 361 GRLVKNHCKMDRRWWIAQALRYLMRFQSEYMCRLLNVARHSAFGMQAAKMVLENVPDPPK 420
GRLVKNHCKMDRRWWIAQALRYLMRFQSEYMCRLLNVARHSAFGMQAAKMVLENVPDPPK
Sbjct: 361 GRLVKNHCKMDRRWWIAQALRYLMRFQSEYMCRLLNVARHSAFGMQAAKMVLENVPDPPK 420
Query: 421 PSISRTESDIERLVWSEHKPYIPGPLISMHVRMGDKACEMEVVGFEKYMELAGRLRKRFP 480
PSISRTESDIERLVWSEHKPYIPGPLISMHVRMGDKACEMEVVGFEKYMELAGRLRKRFP
Sbjct: 421 PSISRTESDIERLVWSEHKPYIPGPLISMHVRMGDKACEMEVVGFEKYMELAGRLRKRFP 480
Query: 481 SLKNIWLSTEMQEVIDETKLYPKWNFYFTNVTRQDVNVSMAMYEASLGRETSTNYPLVNF 540
SLKNIWLSTEMQEVIDETKLYPKWNFYFTNVTRQDVNVSMAMYEASLGRETSTNYPLVNF
Sbjct: 481 SLKNIWLSTEMQEVIDETKLYPKWNFYFTNVTRQDVNVSMAMYEASLGRETSTNYPLVNF 540
Query: 541 IMATEADFFIGALGSTWCYLIDGMRNTAGKVMSGYLSVNKDRFW 584
IMATEADFFIGALGSTWCYLIDGMRNTAGKVMSGYLSVNKDRFW
Sbjct: 541 IMATEADFFIGALGSTWCYLIDGMRNTAGKVMSGYLSVNKDRFW 584
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,801,757
Number of extensions: 934740
Number of successful extensions: 1972
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1972
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 478
Effective length of database: 11,501,117
Effective search space: 5497533926
Effective search space used: 5497533926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)