BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0805400 Os02g0805400|Os02g0805400
         (401 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0805400  Galactose oxidase, central domain containing p...   554   e-158

>Os02g0805400 Galactose oxidase, central domain containing protein
          Length = 401

 Score =  554 bits (1428), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/401 (72%), Positives = 290/401 (72%)

Query: 1   MGSLDGDAATXXXXXXXXXXXXXXXXXXXXXXXXIYACFALGGSNSLECYEPGANTWRRV 60
           MGSLDGDAAT                        IYACFALGGSNSLECYEPGANTWRRV
Sbjct: 1   MGSLDGDAATSPSFSSTGSSGDGNGGGGGGGRVGIYACFALGGSNSLECYEPGANTWRRV 60

Query: 61  GELPGVPDGHVLKGFAVVALGDFVYVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           GELPGVPDGHVLKGFAVVALGDFVYVI                                 
Sbjct: 61  GELPGVPDGHVLKGFAVVALGDFVYVIGGRLCRRERGGGGEYRDTDVDVRGDVVRYDARR 120

Query: 121 GEWGRCAPLLVPRFDFACAPCGGKICVAGGQRSLSGARGTAAAEVFDADKGGWSRLPDMS 180
           GEWGRCAPLLVPRFDFACAPCGGKICVAGGQRSLSGARGTAAAEVFDADKGGWSRLPDMS
Sbjct: 121 GEWGRCAPLLVPRFDFACAPCGGKICVAGGQRSLSGARGTAAAEVFDADKGGWSRLPDMS 180

Query: 181 TRRYKCVGVTWHGRFHVVGGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE 240
           TRRYKCVGVTWHGRFHVVGGF                                      E
Sbjct: 181 TRRYKCVGVTWHGRFHVVGGFAESTSSSSPAAAADDEAAAAPPGRATALLLLLPQSSALE 240

Query: 241 RSSAEVFDCARGVWEIIPGMWQLDVPPNQIVAVAGRLLSSGDCLNSWKGHVEVYDGELNI 300
           RSSAEVFDCARGVWEIIPGMWQLDVPPNQIVAVAGRLLSSGDCLNSWKGHVEVYDGELNI
Sbjct: 241 RSSAEVFDCARGVWEIIPGMWQLDVPPNQIVAVAGRLLSSGDCLNSWKGHVEVYDGELNI 300

Query: 301 WSIMDHXXXXXXXXXXXXXXXXQRRYHTMAVVGNQLYFLAGYQVAAGGDGGFRTVSLVHS 360
           WSIMDH                QRRYHTMAVVGNQLYFLAGYQVAAGGDGGFRTVSLVHS
Sbjct: 301 WSIMDHSAMPDMPLLAALPPSAQRRYHTMAVVGNQLYFLAGYQVAAGGDGGFRTVSLVHS 360

Query: 361 FDTSANPGLMPPWRSFQPTMDQDGVEDGSKELFSQCCSVQL 401
           FDTSANPGLMPPWRSFQPTMDQDGVEDGSKELFSQCCSVQL
Sbjct: 361 FDTSANPGLMPPWRSFQPTMDQDGVEDGSKELFSQCCSVQL 401



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.140    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,236,332
Number of extensions: 465233
Number of successful extensions: 1207
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1211
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)