Os02g0805400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os02g0805400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.76 | 0.514 | 5.31 | 1.15 | 0.783 | 1.23 | -1.52 | 2.36 | -0.144 | 3.49 | 30.6 | 362 | -- | -- |
| 124.08 | 0.519 | 5.26 | 1.57 | 0.762 | 1.26 | -1.07 | -- | -0.0493 | 3.67 | 31.85 | 302 | -- | -- |
| 123.5 | 0.518 | 5.29 | 1.17 | 1.01 | 1.16 | -- | 2.19 | -0.111 | 3.7 | 26.09 | 512 | -- | -- |
| 126.97 | 0.525 | 5.26 | 1.58 | 0.759 | 1.22 | -- | -- | -0.0497 | 4.29 | 31.27 | 241 | -- | -- |
| 149.51 | 0.569 | 5.24 | 1.55 | -- | 1.74 | -- | 0.955 | 0.035 | -- | 31.4 | 196 | -- | -- |
| 142.54 | 0.56 | 5.3 | 1.28 | 1.14 | -- | -0.763 | -- | -0.264 | 4.13 | -- | -- | -- | -- |
| 144.09 | 0.562 | 5.3 | 1.29 | 1.14 | -- | -- | -- | -0.26 | 4.26 | -- | -- | -- | -- |
| 149.26 | 0.569 | 5.23 | 1.76 | -- | 1.95 | -- | -- | 0.0704 | -- | 32.32 | 195 | -- | -- |
| 185.03 | 0.634 | 5.32 | -- | 1.02 | 0.513 | -- | -- | -0.343 | 4.21 | 41.96 | 241 | -- | -- |
| 213.72 | 0.683 | 5.3 | 1.34 | -- | -- | -- | -- | -0.229 | -- | -- | -- | -- | -- |
| 188 | 0.641 | 5.33 | -- | 1.16 | -- | -- | -- | -0.403 | 4.24 | -- | -- | -- | -- |
| 224.96 | 0.699 | 5.3 | -- | -- | 1.52 | -- | -- | -0.212 | -- | 55.28 | 158 | -- | -- |
| 260.81 | 0.754 | 5.34 | -- | -- | -- | -- | -- | -0.378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 20 |
| 7 | 117.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 15 |
| 18 | 118.16 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 31 | 119.18 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 40 | 119.68 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 41 | 119.70 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 18 |
| 53 | 119.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 119 | 120.61 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 19 |
| 130 | 120.77 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 21 |
| 131 | 120.78 | temperature | 25 | 720 | < th | dose independent | sin | 12 | NA |
| 138 | 120.84 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 20 |
| 160 | 121.04 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 21 |
| 169 | 121.08 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 184 | 121.17 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 23 |
| 200 | 121.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 231 | 121.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 233 | 121.44 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 7 |
| 241 | 121.51 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 5 |
| 243 | 121.51 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 23 |
| 268 | 121.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 271 | 121.60 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 279 | 121.63 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 3 |
| 286 | 121.65 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 23 |
| 307 | 121.72 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 309 | 121.72 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 330 | 121.79 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 23 |
| 335 | 121.81 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 337 | 121.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 349 | 121.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 351 | 121.90 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 359 | 121.93 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 11 |
| 379 | 121.98 | temperature | 25 | 720 | < th | dose independent | rect. | 21 | 1 |
| 404 | 122.05 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 413 | 122.09 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 444 | 122.18 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 23 |
| 449 | 122.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 478 | 122.27 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 23 |
| 501 | 122.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 530 | 122.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 14 |
| 572 | 122.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 606 | 122.58 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 613 | 122.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 12 |
| 620 | 122.62 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 23 |
| 705 | 122.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 756 | 122.96 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 775 | 123.00 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 782 | 123.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 783 | 123.03 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 843 | 123.19 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 16 |
| 889 | 123.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 896 | 123.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 904 | 123.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 935 | 123.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |