BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0804600 Os02g0804600|J065067F23
         (179 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0804600  Molybdenum cofactor biosynthesis domain contai...   259   7e-70
Os02g0525400  Similar to Molybdenum cofactor synthesis prote...    94   6e-20

>Os02g0804600 Molybdenum cofactor biosynthesis domain containing protein
          Length = 179

 Score =  259 bits (662), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 128/148 (86%), Positives = 128/148 (86%)

Query: 32  DGRIRLLESQLRLGXXXXXXXXXXEVEPTGXXXXXXXXXXDMISRYRRHLLLPQFGLEGQ 91
           DGRIRLLESQLRLG          EVEPTG          DMISRYRRHLLLPQFGLEGQ
Sbjct: 32  DGRIRLLESQLRLGAAPLPPSAAAEVEPTGSPSSSSSAAADMISRYRRHLLLPQFGLEGQ 91

Query: 92  RKLSQSSILVVGAGGLGSPVAMYLAACGVGKSEFPFFYHPKHCSNLTWKNYCDFLYNKSC 151
           RKLSQSSILVVGAGGLGSPVAMYLAACGVGKSEFPFFYHPKHCSNLTWKNYCDFLYNKSC
Sbjct: 92  RKLSQSSILVVGAGGLGSPVAMYLAACGVGKSEFPFFYHPKHCSNLTWKNYCDFLYNKSC 151

Query: 152 SSGINYRTSSFGKNVSSPEEQIFLLRMR 179
           SSGINYRTSSFGKNVSSPEEQIFLLRMR
Sbjct: 152 SSGINYRTSSFGKNVSSPEEQIFLLRMR 179



>Os02g0525400 Similar to Molybdenum cofactor synthesis protein 3 (Molybdopterin
           synthase sulfurylase) (MPT synthase sulfurylase)
          Length = 274

 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/50 (90%), Positives = 47/50 (94%)

Query: 72  DMISRYRRHLLLPQFGLEGQRKLSQSSILVVGAGGLGSPVAMYLAACGVG 121
           DMI RY RHLLLP FG+EGQRKLSQSSILVVGAGGLGSPVA+YLAACGVG
Sbjct: 76  DMIYRYSRHLLLPDFGVEGQRKLSQSSILVVGAGGLGSPVALYLAACGVG 125



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,515,374
Number of extensions: 171097
Number of successful extensions: 335
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 2
Length of query: 179
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 85
Effective length of database: 12,127,685
Effective search space: 1030853225
Effective search space used: 1030853225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)