BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0804100 Os02g0804100|009-077-E08
         (85 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0804100  Ribosomal protein S30 family protein                115   9e-27
Os06g0172600  Similar to 40S ribosomal protein S30                100   3e-22
AK060583                                                           99   8e-22

>Os02g0804100 Ribosomal protein S30 family protein
          Length = 85

 Score =  115 bits (287), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/85 (80%), Positives = 68/85 (80%)

Query: 1  ITPAAAAASSSQIVRAXXXXXXXWGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKR 60
          ITPAAAAASSSQIVRA       WGKVHGSLARAGKVRGQTP          PRGRAHKR
Sbjct: 1  ITPAAAAASSSQIVRAPPPPPPPWGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR 60

Query: 61 MQYNRRFVTAVVGFGKKRGPNSSEK 85
          MQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 61 MQYNRRFVTAVVGFGKKRGPNSSEK 85



>Os06g0172600 Similar to 40S ribosomal protein S30
          Length = 62

 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 51/62 (82%)

Query: 24 WGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 83
           GKVHGSLARAGKVRGQTP          PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 84 EK 85
          EK
Sbjct: 61 EK 62



>AK060583 
          Length = 62

 Score = 98.6 bits (244), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/62 (80%), Positives = 50/62 (80%)

Query: 24 WGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 83
           GKVHGSLARAGKVRGQTP          PRGRAHKRMQYNRRFVTA VGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAAVGFGKKRGPNSS 60

Query: 84 EK 85
          EK
Sbjct: 61 EK 62



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.128    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,216,031
Number of extensions: 58116
Number of successful extensions: 51
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 3
Length of query: 85
Length of database: 17,035,801
Length adjustment: 55
Effective length of query: 30
Effective length of database: 14,164,031
Effective search space: 424920930
Effective search space used: 424920930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)