Os02g0804100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein S30 family protein.
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Os02g0804100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein S30 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.48 | 0.469 | 3.09 | 0.995 | 0.0177 | -0.515 | 0.395 | 4.56 | 0.126 | 8.94 | 29.94 | 1377 | -- | -- |
| 101.12 | 0.468 | 3.2 | 0.14 | 0.0496 | -0.198 | 0.314 | -- | 0.0899 | 9 | 19.7 | 7708 | -- | -- |
| 99.91 | 0.466 | 3.09 | 0.989 | 0.0319 | -0.507 | -- | 4.49 | 0.135 | 14.2 | 30 | 1377 | -- | -- |
| 101.4 | 0.469 | 3.21 | 0.166 | 0.0547 | -0.243 | -- | -- | 0.113 | 9.96 | 19.3 | 6956 | -- | -- |
| 100.03 | 0.466 | 3.09 | 0.995 | -- | -0.51 | -- | 4.49 | 0.125 | -- | 29.99 | 1377 | -- | -- |
| 102.2 | 0.474 | 3.21 | 0.0183 | 0.0291 | -- | 0.385 | -- | 0.0505 | 8.64 | -- | -- | -- | -- |
| 102.57 | 0.474 | 3.21 | 0.0326 | 0.05 | -- | -- | -- | 0.0517 | 12.7 | -- | -- | -- | -- |
| 101.28 | 0.469 | 3.2 | 0.249 | -- | -0.338 | -- | -- | 0.132 | -- | 19 | 6867 | -- | -- |
| 102.05 | 0.47 | 3.21 | -- | 0.0438 | -0.161 | -- | -- | 0.0766 | 9.73 | 18.9 | 6011 | -- | -- |
| 102.73 | 0.474 | 3.21 | 0.0308 | -- | -- | -- | -- | 0.0508 | -- | -- | -- | -- | -- |
| 102.6 | 0.474 | 3.21 | -- | 0.0494 | -- | -- | -- | 0.0481 | 12.7 | -- | -- | -- | -- |
| 102 | 0.47 | 3.21 | -- | -- | -0.176 | -- | -- | 0.0617 | -- | 14.19 | 13029 | -- | -- |
| 102.75 | 0.473 | 3.21 | -- | -- | -- | -- | -- | 0.0474 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.31 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 1 |
| 8 | 84.31 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 24 | 84.72 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 27 | 84.79 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 1 |
| 28 | 84.82 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 88 | 84.82 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 149 | 87.58 | radiation | 30 | 30 | > th | dose independent | rect. | 7 | 1 |
| 247 | 91.96 | radiation | 20 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 276 | 92.39 | radiation | 30 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 311 | 92.58 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 328 | 92.66 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 3 |
| 367 | 92.91 | wind | 1 | 30 | < th | dose dependent | rect. | 23 | 1 |
| 415 | 93.15 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 8 |
| 429 | 93.42 | wind | 1 | 270 | < th | dose dependent | rect. | 21 | 2 |
| 448 | 93.73 | wind | 1 | 270 | < th | dose independent | rect. | 21 | 2 |
| 465 | 93.84 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 2 |
| 516 | 94.36 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 1 |
| 542 | 94.66 | wind | 1 | 270 | < th | dose dependent | rect. | 15 | 8 |
| 547 | 94.76 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 753 | 95.80 | wind | 1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 769 | 95.85 | wind | 1 | 30 | < th | dose dependent | rect. | 6 | 18 |
| 902 | 96.38 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 13 |
| 924 | 96.51 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 23 | 7 |
| 925 | 96.52 | wind | 1 | 720 | < th | dose independent | rect. | 17 | 6 |
| 967 | 96.73 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 973 | 96.75 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 8 |