BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0803800 Os02g0803800|AK109780
         (298 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0803800  Conserved hypothetical protein                      329   2e-90

>Os02g0803800 Conserved hypothetical protein
          Length = 298

 Score =  329 bits (843), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/298 (62%), Positives = 186/298 (62%)

Query: 1   MTDLGGWPXXXXXXXXXXXXXXXXVTRLVVGGRIPAGTVGFRKRPVRKXXXXXXXXXXQL 60
           MTDLGGWP                VTRLVVGGRIPAGTVGFRKRPVRK          QL
Sbjct: 1   MTDLGGWPSSHCKTSERSSSSSSSVTRLVVGGRIPAGTVGFRKRPVRKSNSWGGSSSWQL 60

Query: 61  LLMMRRHRSSVRQKRSTSGRPDALGLKAPAIHPNSRRRKAMVEGKGIHLGGTVKSSGAVR 120
           LLMMRRHRSSVRQKRSTSGRPDALGLKAPAIHPNSRRRKAMVEGKGIHLGGTVKSSGAVR
Sbjct: 61  LLMMRRHRSSVRQKRSTSGRPDALGLKAPAIHPNSRRRKAMVEGKGIHLGGTVKSSGAVR 120

Query: 121 GYRAFAQRGPNMAFMAAGMIWNMAHGTQCSSAMGGSQWWQKSTTIQSXXXXXXXXXXXXX 180
           GYRAFAQRGPNMAFMAAGMIWNMAHGTQCSSAMGGSQWWQKSTTIQS             
Sbjct: 121 GYRAFAQRGPNMAFMAAGMIWNMAHGTQCSSAMGGSQWWQKSTTIQSGRFARPARNAANG 180

Query: 181 XXXXSQAFLTSPSLSGVTSAVDXXXXXXXXXXXXXXXXXXXDDRKGSXXXXXXXXXXXXX 240
               SQAFLTSPSLSGVTSAVD                   DDRKGS             
Sbjct: 181 AARPSQAFLTSPSLSGVTSAVDSAPSGSPSTVSASAAAGGGDDRKGSPAPAGAWRGFAAW 240

Query: 241 XXXXXXXXXXXXXXTAGGRGSCXXXXXXXXXXXXXXXXXXXXXXXISRSPESSERVLV 298
                         TAGGRGSC                       ISRSPESSERVLV
Sbjct: 241 RGRRRRGPSPRGAWTAGGRGSCGRTPARGTSPRPGRRRRLLPSPTISRSPESSERVLV 298



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.130    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,396,243
Number of extensions: 208504
Number of successful extensions: 434
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 198
Effective length of database: 11,814,401
Effective search space: 2339251398
Effective search space used: 2339251398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)