BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0799700 Os02g0799700|AK065260
         (173 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0799700  Conserved hypothetical protein                      218   2e-57

>Os02g0799700 Conserved hypothetical protein
          Length = 173

 Score =  218 bits (555), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/163 (72%), Positives = 118/163 (72%)

Query: 11  PSGHVLSAAHYRSASPTRVKLXXXXXXXXXXXXXXXXXXCMCSPTNHPGSFRCSLHKEQK 70
           PSGHVLSAAHYRSASPTRVKL                  CMCSPTNHPGSFRCSLHKEQK
Sbjct: 11  PSGHVLSAAHYRSASPTRVKLAGGGARASVSVSSVSRRSCMCSPTNHPGSFRCSLHKEQK 70

Query: 71  RSVHHKXXXXXXXXXXXXXXXXXGGAVRLGGARRMGGSALVRIGAVESGQWARRALAATI 130
           RSVHHK                 GGAVRLGGARRMGGSALVRIGAVESGQWARRALAATI
Sbjct: 71  RSVHHKAAAAPSSPPSPTSPPASGGAVRLGGARRMGGSALVRIGAVESGQWARRALAATI 130

Query: 131 RPSPXXXXXXXXXXVAGLRPRPSRLSAVSMAGDRAGDNHHHHR 173
           RPSP          VAGLRPRPSRLSAVSMAGDRAGDNHHHHR
Sbjct: 131 RPSPAAQQAQHRRRVAGLRPRPSRLSAVSMAGDRAGDNHHHHR 173



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.129    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,004,043
Number of extensions: 161724
Number of successful extensions: 551
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 549
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 79
Effective length of database: 12,127,685
Effective search space: 958087115
Effective search space used: 958087115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)