BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0797600 Os02g0797600|AK120644
         (218 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0797600  Conserved hypothetical protein                      224   5e-59
AK105442                                                          224   5e-59

>Os02g0797600 Conserved hypothetical protein
          Length = 218

 Score =  224 bits (570), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 128/218 (58%), Positives = 128/218 (58%)

Query: 1   MATAAVLGSHDALDNRMHLGAFAVSPASKPRRRRHXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MATAAVLGSHDALDNRMHLGAFAVSPASKPRRRRH                         
Sbjct: 1   MATAAVLGSHDALDNRMHLGAFAVSPASKPRRRRHSKAASPPPKVAAVSSPPVVKSAARV 60

Query: 61  XXXXXXXXXXXXXXQGRRSPVARKQGSPTKELPKQRLVMGEIRILKRGEEXXXXXXXXXX 120
                         QGRRSPVARKQGSPTKELPKQRLVMGEIRILKRGEE          
Sbjct: 61  ASPPPKAAAAAAVPQGRRSPVARKQGSPTKELPKQRLVMGEIRILKRGEEPPVSSPSPAP 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXTDQKAPRPARSKQQQHTAAVPTKIKSVADAPVYAGXX 180
                                  TDQKAPRPARSKQQQHTAAVPTKIKSVADAPVYAG  
Sbjct: 121 VAAQAAAVDQRAPRVPAVAQAAPTDQKAPRPARSKQQQHTAAVPTKIKSVADAPVYAGPA 180

Query: 181 XXXXXXXXXXXXXXXXIRRAEAEATRGLRCLLRIGELP 218
                           IRRAEAEATRGLRCLLRIGELP
Sbjct: 181 FSSASPEPSSLPFPAFIRRAEAEATRGLRCLLRIGELP 218



>AK105442 
          Length = 218

 Score =  224 bits (570), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 128/218 (58%), Positives = 128/218 (58%)

Query: 1   MATAAVLGSHDALDNRMHLGAFAVSPASKPRRRRHXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MATAAVLGSHDALDNRMHLGAFAVSPASKPRRRRH                         
Sbjct: 1   MATAAVLGSHDALDNRMHLGAFAVSPASKPRRRRHSKAASPPPKVAAVSSPPVVKSAARV 60

Query: 61  XXXXXXXXXXXXXXQGRRSPVARKQGSPTKELPKQRLVMGEIRILKRGEEXXXXXXXXXX 120
                         QGRRSPVARKQGSPTKELPKQRLVMGEIRILKRGEE          
Sbjct: 61  ASPPPKAAAAAAVPQGRRSPVARKQGSPTKELPKQRLVMGEIRILKRGEEPPVSSPSPAP 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXTDQKAPRPARSKQQQHTAAVPTKIKSVADAPVYAGXX 180
                                  TDQKAPRPARSKQQQHTAAVPTKIKSVADAPVYAG  
Sbjct: 121 VAAQAAAVDQRAPRVPAVAQAAPTDQKAPRPARSKQQQHTAAVPTKIKSVADAPVYAGPA 180

Query: 181 XXXXXXXXXXXXXXXXIRRAEAEATRGLRCLLRIGELP 218
                           IRRAEAEATRGLRCLLRIGELP
Sbjct: 181 FSSASPEPSSLPFPAFIRRAEAEATRGLRCLLRIGELP 218



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,371,392
Number of extensions: 95585
Number of successful extensions: 243
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 4
Length of query: 218
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 121
Effective length of database: 11,971,043
Effective search space: 1448496203
Effective search space used: 1448496203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)