BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0794000 Os02g0794000|AK073661
         (520 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0794000  Conserved hypothetical protein                      986   0.0  

>Os02g0794000 Conserved hypothetical protein
          Length = 520

 Score =  986 bits (2550), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/502 (97%), Positives = 490/502 (97%)

Query: 19  ENVSSDAGHAEPSCSTPAHHQVFRPVTRSMTRKPTAAAAASSDVKGGESASTSKRRDSTD 78
           ENVSSDAGHAEPSCSTPAHHQVFRPVTRSMTRKPTAAAAASSDVKGGESASTSKRRDSTD
Sbjct: 19  ENVSSDAGHAEPSCSTPAHHQVFRPVTRSMTRKPTAAAAASSDVKGGESASTSKRRDSTD 78

Query: 79  PCFNTQSAAARPSVTRVRTPHKVASSAWKPLTQPIVMSEDLKRASVPSTNPSAKRSRVAS 138
           PCFNTQSAAARPSVTRVRTPHKVASSAWKPLTQPIVMSEDLKRASVPSTNPSAKRSRVAS
Sbjct: 79  PCFNTQSAAARPSVTRVRTPHKVASSAWKPLTQPIVMSEDLKRASVPSTNPSAKRSRVAS 138

Query: 139 SQAAEDSPTVHRGKKRNEESASKGDQLDGAVIPSPSKKLQTGKSPSDVLPKRKPTIRNKD 198
           SQAAEDSPTVHRGKKRNEESASKGDQLDGAVIPSPSKKLQTGKSPSDVLPKRKPTIRNKD
Sbjct: 139 SQAAEDSPTVHRGKKRNEESASKGDQLDGAVIPSPSKKLQTGKSPSDVLPKRKPTIRNKD 198

Query: 199 GKLAAPLSMVKLETESGESSVIASSKIGPATTNDNCQSAELAQQLQLDTKNNSNDIITEA 258
           GKLAAPLSMVKLETESGESSVIASSKIGPATTNDNCQSAELAQQLQLDTKNNSNDIITEA
Sbjct: 199 GKLAAPLSMVKLETESGESSVIASSKIGPATTNDNCQSAELAQQLQLDTKNNSNDIITEA 258

Query: 259 IAYGTNQADLLVAPVTTDAIASGSSQVNLSAFPVTAEAIPNRTHQVNHSAGPLNIKAMIN 318
           IAYGTNQADLLVAPVTTDAIASGSSQVNLSAFPVTAEAIPNRTHQVNHSAGPLNIKAMIN
Sbjct: 259 IAYGTNQADLLVAPVTTDAIASGSSQVNLSAFPVTAEAIPNRTHQVNHSAGPLNIKAMIN 318

Query: 319 RTSLVNKPVAPVNAKAIANRAQQVAAHNKLPSPVIAAPRQNLQDDLQRKLAKLLIARKQP 378
           RTSLVNKPVAPVNAKAIANRAQQVAAHNKLPSPVIAAPRQNLQDDLQRKLAKLLIARKQP
Sbjct: 319 RTSLVNKPVAPVNAKAIANRAQQVAAHNKLPSPVIAAPRQNLQDDLQRKLAKLLIARKQP 378

Query: 379 SGQAGATAPLVSPKLEIGKAKGSSSNVLSDPAYANVKAXXXXXXXXXXXXFKSANSQPQV 438
           SGQAGATAPLVSPKLEIGKAKGSSSNVLSDPAYANVKA            FKSANSQPQV
Sbjct: 379 SGQAGATAPLVSPKLEIGKAKGSSSNVLSDPAYANVKALLIKQQEQLLQQFKSANSQPQV 438

Query: 439 HIKGPALTDKDEAPPVEPLGTRCQLCKLDIAFRPQGDDARDNAPPVAAVLGCHHAFHSSC 498
           HIKGPALTDKDEAPPVEPLGTRCQLCKLDIAFRPQGDDARDNAPPVAAVLGCHHAFHSSC
Sbjct: 439 HIKGPALTDKDEAPPVEPLGTRCQLCKLDIAFRPQGDDARDNAPPVAAVLGCHHAFHSSC 498

Query: 499 IEAIYGLAEPSQCIGCLDSAKA 520
           IEAIYGLAEPSQCIGCLDSAKA
Sbjct: 499 IEAIYGLAEPSQCIGCLDSAKA 520



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.123    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,363,858
Number of extensions: 756213
Number of successful extensions: 3410
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3404
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 415
Effective length of database: 11,553,331
Effective search space: 4794632365
Effective search space used: 4794632365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)