BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0789600 Os02g0789600|AK112100
         (617 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0789600  Similar to DEM2                                    1181   0.0  
Os02g0178500  Similar to DEM2                                     759   0.0  

>Os02g0789600 Similar to DEM2
          Length = 617

 Score = 1181 bits (3055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/617 (93%), Positives = 576/617 (93%)

Query: 1   MGGAHSRXXXXXXXXXXXXXXXXXXAQTATSAASREDILRTSTPSSLEFXXXXXXXXXXX 60
           MGGAHSR                  AQTATSAASREDILRTSTPSSLEF           
Sbjct: 1   MGGAHSREDLDLTSSDDEDDDEEYDAQTATSAASREDILRTSTPSSLEFLDAKLKALDLK 60

Query: 61  YQAPNAAKLYLHVGGASASARWVPAERRATYAFVDKATAAGDSDCGGPRWVLEVGPGPRV 120
           YQAPNAAKLYLHVGGASASARWVPAERRATYAFVDKATAAGDSDCGGPRWVLEVGPGPRV
Sbjct: 61  YQAPNAAKLYLHVGGASASARWVPAERRATYAFVDKATAAGDSDCGGPRWVLEVGPGPRV 120

Query: 121 SAPVGPALQLKALPAQRRADFAAGGSVWALRLPTDAAFRRFRQEYDRCLFENTYGVEATD 180
           SAPVGPALQLKALPAQRRADFAAGGSVWALRLPTDAAFRRFRQEYDRCLFENTYGVEATD
Sbjct: 121 SAPVGPALQLKALPAQRRADFAAGGSVWALRLPTDAAFRRFRQEYDRCLFENTYGVEATD 180

Query: 181 EGRKEVFGADFAAWARPGESDDAVWADAEDSFTPPVATPARDLLEEFEEEAGDGSIQSLA 240
           EGRKEVFGADFAAWARPGESDDAVWADAEDSFTPPVATPARDLLEEFEEEAGDGSIQSLA
Sbjct: 181 EGRKEVFGADFAAWARPGESDDAVWADAEDSFTPPVATPARDLLEEFEEEAGDGSIQSLA 240

Query: 241 LGALDNSFLVGGSGIQVVKNFRHGVHGKGVSVRISDGRGGGNAYMTPQKALLMRGETNML 300
           LGALDNSFLVGGSGIQVVKNFRHGVHGKGVSVRISDGRGGGNAYMTPQKALLMRGETNML
Sbjct: 241 LGALDNSFLVGGSGIQVVKNFRHGVHGKGVSVRISDGRGGGNAYMTPQKALLMRGETNML 300

Query: 301 LMSPGETGTRHSNGVHHVDIETGKVVAQWRFEKDGTDITMRDIANDSKGAQLEPSGSTFL 360
           LMSPGETGTRHSNGVHHVDIETGKVVAQWRFEKDGTDITMRDIANDSKGAQLEPSGSTFL
Sbjct: 301 LMSPGETGTRHSNGVHHVDIETGKVVAQWRFEKDGTDITMRDIANDSKGAQLEPSGSTFL 360

Query: 361 GLDDNRLCRWDMRDSRGRVQTIGSSSESPVLQWSQGHQFSRGTNFQCFASTXXXXXXXXX 420
           GLDDNRLCRWDMRDSRGRVQTIGSSSESPVLQWSQGHQFSRGTNFQCFAST         
Sbjct: 361 GLDDNRLCRWDMRDSRGRVQTIGSSSESPVLQWSQGHQFSRGTNFQCFASTGDGSIVVGS 420

Query: 421 XXXKIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTIFKDKDGK 480
              KIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTIFKDKDGK
Sbjct: 421 VDGKIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTIFKDKDGK 480

Query: 481 EKTGFSGRMGNRIAAPRLLKLSPLDSILAGSENKFHGGQFSWVTENGKQEKHLVATVGKF 540
           EKTGFSGRMGNRIAAPRLLKLSPLDSILAGSENKFHGGQFSWVTENGKQEKHLVATVGKF
Sbjct: 481 EKTGFSGRMGNRIAAPRLLKLSPLDSILAGSENKFHGGQFSWVTENGKQEKHLVATVGKF 540

Query: 541 SVIWNFQQVKDSNHECYRDQEGLKSCYCYKVVLKDESIVDSRFMHEKFATTDSPEAPLVV 600
           SVIWNFQQVKDSNHECYRDQEGLKSCYCYKVVLKDESIVDSRFMHEKFATTDSPEAPLVV
Sbjct: 541 SVIWNFQQVKDSNHECYRDQEGLKSCYCYKVVLKDESIVDSRFMHEKFATTDSPEAPLVV 600

Query: 601 ATPMKVSSFSLANRRLH 617
           ATPMKVSSFSLANRRLH
Sbjct: 601 ATPMKVSSFSLANRRLH 617



>Os02g0178500 Similar to DEM2
          Length = 649

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/560 (67%), Positives = 430/560 (76%), Gaps = 18/560 (3%)

Query: 67  AKLYLHVGGASASARWVPAERRATYAFVDKATAAGDSDCGGPRWVLEVGPGPRVSAPVGP 126
            KLYLH+GG+S SARW+ ++R A  +FV       D       W L VG   ++ A VGP
Sbjct: 95  VKLYLHIGGSSPSARWIISDRLAAASFVRAGDDDDDDAPSSGPWCLVVGS--KIRARVGP 152

Query: 127 ALQLKALPAQRRADFAAGGSVWALRLPTDAAFRRFRQEYDRCLFENTYGVEATDEGRKEV 186
            LQLK  PAQRR DF A G VWAL+      +  F  +Y  CLFEN+YGV ATDEGR +V
Sbjct: 153 ELQLKTFPAQRRVDFVADG-VWALKFLHADGYPNFYAKYQSCLFENSYGVAATDEGRAKV 211

Query: 187 FGADFAAWARPGESDDAVWADAEDSFTPP-----------VATPARDLLEEFEEEAGDGS 235
           FG DFAAWARP + D+++W DA D F P            +  P  + L E+EE   +G 
Sbjct: 212 FGKDFAAWARPEDGDESIWEDATDGFVPSPSRSPMPSRSPILKPLMEDLREYEEPVEEGG 271

Query: 236 -IQSLALGALDNSFLVGGSGIQVVKNFRHGVHGKGVSVRISDGRGGGNAYMTPQKALLMR 294
            IQSLALGALDNSFLVG SGIQVV+NF HG+HGKGVSV+ S   GG   + TP+KALLMR
Sbjct: 272 GIQSLALGALDNSFLVGDSGIQVVRNFEHGIHGKGVSVKFS---GGSTNFSTPKKALLMR 328

Query: 295 GETNMLLMSPGETGTRHSNGVHHVDIETGKVVAQWRFEKDGTDITMRDIANDSKGAQLEP 354
            ETNMLLMSP   G  H+ GVH +DIETGKVV++W+F KDG DI MRDI NDSKGAQ++P
Sbjct: 329 AETNMLLMSPATDGKPHAKGVHQLDIETGKVVSEWKFGKDGADINMRDITNDSKGAQMDP 388

Query: 355 SGSTFLGLDDNRLCRWDMRDSRGRVQTIGSSSESPVLQWSQGHQFSRGTNFQCFASTXXX 414
           S STFLGLDDNRLCRWDMRD RG VQ I S++ESPVLQW+QGHQFSRGTNFQCFAST   
Sbjct: 389 SESTFLGLDDNRLCRWDMRDRRGIVQNIASATESPVLQWTQGHQFSRGTNFQCFASTGDG 448

Query: 415 XXXXXXXXXKIRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTIF 474
                    K+RLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTIF
Sbjct: 449 SIVVGSLDGKVRLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTIF 508

Query: 475 KDKDGKEKTGFSGRMGNRIAAPRLLKLSPLDSILAGSENKFHGGQFSWVTENGKQEKHLV 534
            DKDGKEKTGF GRMGNRIAAPRLLKL+PLDS LAG  N F  G+FSWVTENGKQE+HLV
Sbjct: 509 IDKDGKEKTGFGGRMGNRIAAPRLLKLTPLDSHLAGQNNIFREGRFSWVTENGKQERHLV 568

Query: 535 ATVGKFSVIWNFQQVKDSNHECYRDQEGLKSCYCYKVVLKDESIVDSRFMHEKFATTDSP 594
           ATVGK+SV+WNF QVK+S+HECY+ QEGLKSCYCYKV+ KDESIV SRFMHEK+A +D+P
Sbjct: 569 ATVGKYSVVWNFLQVKNSHHECYQCQEGLKSCYCYKVIPKDESIVASRFMHEKYAVSDTP 628

Query: 595 EAPLVVATPMKVSSFSLANR 614
           EAPLVVATPMKV+SFS++++
Sbjct: 629 EAPLVVATPMKVTSFSISSK 648



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,414,243
Number of extensions: 1033047
Number of successful extensions: 2363
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2359
Number of HSP's successfully gapped: 2
Length of query: 617
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 510
Effective length of database: 11,448,903
Effective search space: 5838940530
Effective search space used: 5838940530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)