BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0787700 Os02g0787700|AK070412
(175 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0787700 Conserved hypothetical protein 289 8e-79
>Os02g0787700 Conserved hypothetical protein
Length = 175
Score = 289 bits (739), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 154/175 (88%), Positives = 154/175 (88%)
Query: 1 MFRRPVAVTLPTSTNCVKPRFVGTLTRSGSPLGDTVQPLGVSRGSPGQRICLSVLALPAF 60
MFRRPVAVTLPTSTNCVKPRFVGTLTRSGSPLGDTVQPLGVSRGSPGQRICLSVLALPAF
Sbjct: 1 MFRRPVAVTLPTSTNCVKPRFVGTLTRSGSPLGDTVQPLGVSRGSPGQRICLSVLALPAF 60
Query: 61 RSCVIPNSGVQNPTVLAPLPMMFTTSYAGGWSCPSTSLNLPASPSNVVLRTALRSAVPVA 120
RSCVIPNSGVQNPTVLAPLPMMFTTSYAGGWSCPSTSLNLPASPSNVVLRTALRSAVPVA
Sbjct: 61 RSCVIPNSGVQNPTVLAPLPMMFTTSYAGGWSCPSTSLNLPASPSNVVLRTALRSAVPVA 120
Query: 121 DTPSRSRSVSGALVCGVWNXXXXXXXXXXXXXXXXXXXXXQNLRTVGSRTSSTVG 175
DTPSRSRSVSGALVCGVWN QNLRTVGSRTSSTVG
Sbjct: 121 DTPSRSRSVSGALVCGVWNAGPATPADSAAAAIAHAVSYAQNLRTVGSRTSSTVG 175
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.131 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,581,794
Number of extensions: 247992
Number of successful extensions: 619
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)