Os02g0787700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0787700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 329.2 | 0.852 | 4.19 | 3.8 | 1.76 | -2.47 | 1.67 | 5.96 | 1.2 | 0.221 | 25.1 | 871 | -- | -- |
| 345.98 | 0.866 | 4.33 | 2.99 | 1.84 | -2.04 | 2.99 | -- | 0.923 | 0.366 | 25.6 | 942 | -- | -- |
| 340.45 | 0.859 | 4.19 | 3.84 | 1.77 | -2.43 | -- | 6.43 | 1.23 | 0.285 | 24.93 | 871 | -- | -- |
| 357 | 0.88 | 4.33 | 2.64 | 1.71 | -1.78 | -- | -- | 0.931 | 0.776 | 24.9 | 934 | -- | -- |
| 436 | 0.978 | 4.31 | 2.4 | -- | -2.11 | -- | -0.951 | 0.935 | -- | 24.93 | 871 | -- | -- |
| 424.85 | 0.966 | 4.35 | 2.21 | 1.39 | -- | 1.53 | -- | 0.78 | 1.48 | -- | -- | -- | -- |
| 433.79 | 0.975 | 4.35 | 2.16 | 1.4 | -- | -- | -- | 0.77 | 1.74 | -- | -- | -- | -- |
| 400.97 | 0.937 | 4.24 | 2.69 | -- | -2.52 | -- | -- | 1.2 | -- | 20.96 | 13 | -- | -- |
| 523.96 | 1.07 | 4.38 | -- | 1.63 | -1.04 | -- | -- | 0.617 | 1.52 | 25.4 | 1007 | -- | -- |
| 553.44 | 1.1 | 4.33 | 2.21 | -- | -- | -- | -- | 0.801 | -- | -- | -- | -- | -- |
| 556.2 | 1.1 | 4.4 | -- | 1.44 | -- | -- | -- | 0.53 | 1.79 | -- | -- | -- | -- |
| 583.92 | 1.13 | 4.33 | -- | -- | -2.01 | -- | -- | 0.828 | -- | 21.1 | 3 | -- | -- |
| 682.54 | 1.22 | 4.39 | -- | -- | -- | -- | -- | 0.556 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 326.85 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 2 | 332.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 4 | 332.75 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 7 | 332.84 | temperature | 25 | 720 | > th | dose dependent | sin | 16 | NA |
| 8 | 332.91 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 14 | 333.60 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 27 | 333.90 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 29 | 333.93 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 34 | 334.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 63 | 335.39 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 85 | 336.04 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 93 | 336.30 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 111 | 337.15 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 112 | 337.25 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 124 | 337.87 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 126 | 337.91 | radiation | 30 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 154 | 338.77 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 155 | 338.78 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 158 | 338.87 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 159 | 338.92 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 163 | 338.98 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 177 | 339.17 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 200 | 339.73 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 204 | 339.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 208 | 339.89 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 209 | 339.91 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 219 | 339.92 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 231 | 340.11 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 237 | 340.22 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 239 | 340.28 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 250 | 340.51 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 267 | 340.76 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 278 | 340.87 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 21 |
| 289 | 340.97 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 299 | 341.10 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 18 |
| 315 | 341.26 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 321 | 341.32 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 322 | 341.32 | temperature | 25 | 14400 | > th | dose dependent | sin | 8 | NA |
| 324 | 341.36 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 20 |
| 362 | 341.78 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 372 | 341.86 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 383 | 341.87 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 394 | 341.97 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 395 | 341.97 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 23 |
| 402 | 342.00 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 409 | 342.04 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 418 | 342.11 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 489 | 342.28 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 550 | 342.66 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 16 |
| 599 | 342.93 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 18 |
| 606 | 342.96 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 612 | 342.97 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 650 | 343.06 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 651 | 343.06 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 681 | 343.14 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 685 | 343.15 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 750 | 343.34 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 815 | 343.56 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 833 | 343.61 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 919 | 343.89 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 18 |