BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0783700 Os02g0783700|AK120371
(560 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0783700 Similar to Lysine-ketoglutarate reductase/sacc... 1089 0.0
>Os02g0783700 Similar to Lysine-ketoglutarate reductase/saccharopine
dehydrogenase bifunctional enzyme
Length = 560
Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/560 (94%), Positives = 530/560 (94%)
Query: 1 MYPSLXXXXXXXXXXXXXXXTFGLPSGICPIVFVFTGTGNVSQGAQEIFKLLPHSFVDAG 60
MYPSL TFGLPSGICPIVFVFTGTGNVSQGAQEIFKLLPHSFVDAG
Sbjct: 1 MYPSLAAAKAAVIAIGEEIATFGLPSGICPIVFVFTGTGNVSQGAQEIFKLLPHSFVDAG 60
Query: 61 KLPELSAARSLSQHPQSSKRVFQLYGCVVSSRDMVTPKDPTRCFNKADYYAHPEHYKPVF 120
KLPELSAARSLSQHPQSSKRVFQLYGCVVSSRDMVTPKDPTRCFNKADYYAHPEHYKPVF
Sbjct: 61 KLPELSAARSLSQHPQSSKRVFQLYGCVVSSRDMVTPKDPTRCFNKADYYAHPEHYKPVF 120
Query: 121 HERIAPYASAIVNCMYWERRFPRLLSIDQLQQLMKNGCPLVGISDITCDIGGSIEFVNKS 180
HERIAPYASAIVNCMYWERRFPRLLSIDQLQQLMKNGCPLVGISDITCDIGGSIEFVNKS
Sbjct: 121 HERIAPYASAIVNCMYWERRFPRLLSIDQLQQLMKNGCPLVGISDITCDIGGSIEFVNKS 180
Query: 181 TSIERPFFRYDPCTNSCHDDMEGNGVICLAVDILPTEFSKEASQHFGDILSKFVARLASA 240
TSIERPFFRYDPCTNSCHDDMEGNGVICLAVDILPTEFSKEASQHFGDILSKFVARLASA
Sbjct: 181 TSIERPFFRYDPCTNSCHDDMEGNGVICLAVDILPTEFSKEASQHFGDILSKFVARLASA 240
Query: 241 KELLELPSHLRKACIAHAGRLTSLYEYIPRMRKTIIELPPAPTNLLPDKKYNSLVSLSGH 300
KELLELPSHLRKACIAHAGRLTSLYEYIPRMRKTIIELPPAPTNLLPDKKYNSLVSLSGH
Sbjct: 241 KELLELPSHLRKACIAHAGRLTSLYEYIPRMRKTIIELPPAPTNLLPDKKYNSLVSLSGH 300
Query: 301 LFDKFLINEALDIIETAGGSFHLIRCDVGQSIDDMSYSELEVGADDTATLDKIIDSLTSL 360
LFDKFLINEALDIIETAGGSFHLIRCDVGQSIDDMSYSELEVGADDTATLDKIIDSLTSL
Sbjct: 301 LFDKFLINEALDIIETAGGSFHLIRCDVGQSIDDMSYSELEVGADDTATLDKIIDSLTSL 360
Query: 361 ANAHGDPNARREIELSLKIGKVNECGTDDSMAKEGSKVLILGAGRVCRPAAEFLASYSNI 420
ANAHGDPNARREIELSLKIGKVNECGTDDSMAKEGSKVLILGAGRVCRPAAEFLASYSNI
Sbjct: 361 ANAHGDPNARREIELSLKIGKVNECGTDDSMAKEGSKVLILGAGRVCRPAAEFLASYSNI 420
Query: 421 FSSSAYDHDIDQIHVIVASLYQKDAEETIDGIRNATAAQLDVADIKNXXXXXXXXXXXXX 480
FSSSAYDHDIDQIHVIVASLYQKDAEETIDGIRNATAAQLDVADIKN
Sbjct: 421 FSSSAYDHDIDQIHVIVASLYQKDAEETIDGIRNATAAQLDVADIKNLSNLVSQVEVVVS 480
Query: 481 XXPASFHAAIARVCIEMKKHLVTASYVDESMSKLEQSAEGAGVTILCEMGLDPGIDHMMS 540
PASFHAAIARVCIEMKKHLVTASYVDESMSKLEQSAEGAGVTILCEMGLDPGIDHMMS
Sbjct: 481 LLPASFHAAIARVCIEMKKHLVTASYVDESMSKLEQSAEGAGVTILCEMGLDPGIDHMMS 540
Query: 541 MKMIDEAHSRKGKIKSFTSF 560
MKMIDEAHSRKGKIKSFTSF
Sbjct: 541 MKMIDEAHSRKGKIKSFTSF 560
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,881,341
Number of extensions: 727546
Number of successful extensions: 1575
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1575
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 454
Effective length of database: 11,501,117
Effective search space: 5221507118
Effective search space used: 5221507118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)