BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0772500 Os02g0772500|AK100349
(1164 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0772500 Protein prenyltransferase domain containing pr... 2172 0.0
>Os02g0772500 Protein prenyltransferase domain containing protein
Length = 1164
Score = 2172 bits (5629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1056/1107 (95%), Positives = 1056/1107 (95%)
Query: 58 QWLSNPSFSFDASSLNIXXXXXXXXXXXXXXXXDEEEAPRPAPAKYDLLPYSPSPPASXX 117
QWLSNPSFSFDASSLNI DEEEAPRPAPAKYDLLPYSPSPPAS
Sbjct: 58 QWLSNPSFSFDASSLNIPATASSSVPPPLSASSDEEEAPRPAPAKYDLLPYSPSPPASDE 117
Query: 118 XXXXXXXXXXXXXXXXXXXXYNSAEASRKPGVRAWAGSETKLAKDYYFDAKGDQDNLAFG 177
YNSAEASRKPGVRAWAGSETKLAKDYYFDAKGDQDNLAFG
Sbjct: 118 ERRDRRKDRKRRKRRREKERYNSAEASRKPGVRAWAGSETKLAKDYYFDAKGDQDNLAFG 177
Query: 178 SIYRMDIARYKSQNMPEARGLKRLLFHNLGVSVHMGHESDLDGLNSKARAGGRYYSAKYA 237
SIYRMDIARYKSQNMPEARGLKRLLFHNLGVSVHMGHESDLDGLNSKARAGGRYYSAKYA
Sbjct: 178 SIYRMDIARYKSQNMPEARGLKRLLFHNLGVSVHMGHESDLDGLNSKARAGGRYYSAKYA 237
Query: 238 VVERNKGFKHLKVLKKDNSAILPEDFIPLGIPSLPENNTTGEQELEESWEDEILRRTREF 297
VVERNKGFKHLKVLKKDNSAILPEDFIPLGIPSLPENNTTGEQELEESWEDEILRRTREF
Sbjct: 238 VVERNKGFKHLKVLKKDNSAILPEDFIPLGIPSLPENNTTGEQELEESWEDEILRRTREF 297
Query: 298 NKMSREFPHNEKIWLDFARFQDKVASTQPQKAARLQTTERKISILEKAVELNPDNEELLL 357
NKMSREFPHNEKIWLDFARFQDKVASTQPQKAARLQTTERKISILEKAVELNPDNEELLL
Sbjct: 298 NKMSREFPHNEKIWLDFARFQDKVASTQPQKAARLQTTERKISILEKAVELNPDNEELLL 357
Query: 358 YLLKAYGERDSTQNLLDKWEQILMKHPDSCKLWKQYLLLCQGEFSRFKVSDLRKSYAYAV 417
YLLKAYGERDSTQNLLDKWEQILMKHPDSCKLWKQYLLLCQGEFSRFKVSDLRKSYAYAV
Sbjct: 358 YLLKAYGERDSTQNLLDKWEQILMKHPDSCKLWKQYLLLCQGEFSRFKVSDLRKSYAYAV 417
Query: 418 QALSAACTKLCRQDTQYDRLEPKYSSLIHLELGLVDIFVNLCRFEWHTGHRELATALFQA 477
QALSAACTKLCRQDTQYDRLEPKYSSLIHLELGLVDIFVNLCRFEWHTGHRELATALFQA
Sbjct: 418 QALSAACTKLCRQDTQYDRLEPKYSSLIHLELGLVDIFVNLCRFEWHTGHRELATALFQA 477
Query: 478 QIEFSLFSPPLHLTTSSKQRLFEHFWNNGGARIGEDGALGWSRWLAKDEESRQNIDIQEN 537
QIEFSLFSPPLHLTTSSKQRLFEHFWNNGGARIGEDGALGWSRWLAKDEESRQNIDIQEN
Sbjct: 478 QIEFSLFSPPLHLTTSSKQRLFEHFWNNGGARIGEDGALGWSRWLAKDEESRQNIDIQEN 537
Query: 538 TQETERGGWSGWFDPSLRTNSETSKVEPSTSDGNDAENPDDEDPSAQEDVESLLKKLGID 597
TQETERGGWSGWFDPSLRTNSETSKVEPSTSDGNDAENPDDEDPSAQEDVESLLKKLGID
Sbjct: 538 TQETERGGWSGWFDPSLRTNSETSKVEPSTSDGNDAENPDDEDPSAQEDVESLLKKLGID 597
Query: 598 GDADYNSEVKDPKTWNRWSFMELSRDNEQWMPLHEKLGSLYSDDAPTGEDNDQLSRVILF 657
GDADYNSEVKDPKTWNRWSFMELSRDNEQWMPLHEKLGSLYSDDAPTGEDNDQLSRVILF
Sbjct: 598 GDADYNSEVKDPKTWNRWSFMELSRDNEQWMPLHEKLGSLYSDDAPTGEDNDQLSRVILF 657
Query: 658 EDITEFLFSLSSEEARFSLICQFIDFYGGKISRWTSTNSSSWIDRNLSLEMITDDIQEDL 717
EDITEFLFSLSSEEARFSLICQFIDFYGGKISRWTSTNSSSWIDRNLSLEMITDDIQEDL
Sbjct: 658 EDITEFLFSLSSEEARFSLICQFIDFYGGKISRWTSTNSSSWIDRNLSLEMITDDIQEDL 717
Query: 718 STVSNLIDKNQTSVHNKMVSLLGTMHEFSQRPGTAKFLKNAILLFLDVFPRNHILEEAVL 777
STVSNLIDKNQTSVHNKMVSLLGTMHEFSQRPGTAKFLKNAILLFLDVFPRNHILEEAVL
Sbjct: 718 STVSNLIDKNQTSVHNKMVSLLGTMHEFSQRPGTAKFLKNAILLFLDVFPRNHILEEAVL 777
Query: 778 VTPQIHTAQEKYLATPATASRALAKNLLKKDRQDLLLCGIYGRIEAMNGDFVKARHIFDL 837
VTPQIHTAQEKYLATPATASRALAKNLLKKDRQDLLLCGIYGRIEAMNGDFVKARHIFDL
Sbjct: 778 VTPQIHTAQEKYLATPATASRALAKNLLKKDRQDLLLCGIYGRIEAMNGDFVKARHIFDL 837
Query: 838 ALSTSQGASEDLRKKVPILYFWYAEMELAIYASRNNSDSVDRAIHVLSCLGDKAKYASFD 897
ALSTSQGASEDLRKKVPILYFWYAEMELAIYASRNNSDSVDRAIHVLSCLGDKAKYASFD
Sbjct: 838 ALSTSQGASEDLRKKVPILYFWYAEMELAIYASRNNSDSVDRAIHVLSCLGDKAKYASFD 897
Query: 898 GSISRPQVLKARQGFKEQIRSLRSSFASDGMKEESVALICSASLFESMTSGFASGLEVIE 957
GSISRPQVLKARQGFKEQIRSLRSSFASDGMKEESVALICSASLFESMTSGFASGLEVIE
Sbjct: 898 GSISRPQVLKARQGFKEQIRSLRSSFASDGMKEESVALICSASLFESMTSGFASGLEVIE 957
Query: 958 ETFYMTPSENNHSLEFEELWMHYIXXXXXXXXXXXXXRVWPKISQGIQTYPYNPKSYAAM 1017
ETFYMTPSENNHSLEFEELWMHYI RVWPKISQGIQTYPYNPKSYAAM
Sbjct: 958 ETFYMTPSENNHSLEFEELWMHYIKQLQKNLNQLSLSRVWPKISQGIQTYPYNPKSYAAM 1017
Query: 1018 LTLGCLYSVSNNLRLTLDKFNQRDPSIIGLLFALSFELCKAGSDNRIHNLFERALTDDKL 1077
LTLGCLYSVSNNLRLTLDKFNQRDPSIIGLLFALSFELCKAGSDNRIHNLFERALTDDKL
Sbjct: 1018 LTLGCLYSVSNNLRLTLDKFNQRDPSIIGLLFALSFELCKAGSDNRIHNLFERALTDDKL 1077
Query: 1078 QKSVLLWRCYLAYEAEIACNASAARRVFFRAIHACPWSKRLWLDGFEKLSSILTLKELSD 1137
QKSVLLWRCYLAYEAEIACNASAARRVFFRAIHACPWSKRLWLDGFEKLSSILTLKELSD
Sbjct: 1078 QKSVLLWRCYLAYEAEIACNASAARRVFFRAIHACPWSKRLWLDGFEKLSSILTLKELSD 1137
Query: 1138 LQEVMRDKELHIRTDIYEILLQDETDT 1164
LQEVMRDKELHIRTDIYEILLQDETDT
Sbjct: 1138 LQEVMRDKELHIRTDIYEILLQDETDT 1164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 36,600,698
Number of extensions: 1513869
Number of successful extensions: 4548
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4546
Number of HSP's successfully gapped: 1
Length of query: 1164
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1052
Effective length of database: 11,187,833
Effective search space: 11769600316
Effective search space used: 11769600316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 162 (67.0 bits)