BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0759800 Os02g0759800|AK067153
         (607 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0759800  Similar to GAMYB-binding protein (Fragment)         890   0.0  
Os06g0218000                                                      287   1e-77
Os10g0339266                                                      120   3e-27

>Os02g0759800 Similar to GAMYB-binding protein (Fragment)
          Length = 607

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/607 (76%), Positives = 462/607 (76%)

Query: 1   MASLKELLPTPKAAASTFYDHSSDPWFKERYGGEXXXXXXXXXXXXXXXXXXXXXXYGKR 60
           MASLKELLPTPKAAASTFYDHSSDPWFKERYGGE                      YGKR
Sbjct: 1   MASLKELLPTPKAAASTFYDHSSDPWFKERYGGESAQSDAAAAAAKPSGPAKPVPPYGKR 60

Query: 61  GGFVPRRPEDFGDGGAFPEIHVAQYPLGMGRRDEKGGSKILALTVDAKGSVAFDAVVKQG 120
           GGFVPRRPEDFGDGGAFPEIHVAQYPLGMGRRDEKGGSKILALTVDAKGSVAFDAVVKQG
Sbjct: 61  GGFVPRRPEDFGDGGAFPEIHVAQYPLGMGRRDEKGGSKILALTVDAKGSVAFDAVVKQG 120

Query: 121 ENASKIVYSKHSDLVPKIXXXXXXXXXXXXXYQKQIEETTERTKAALEKVVNVRLSAAQP 180
           ENASKIVYSKHSDLVPKI             YQKQIEETTERTKAALEKVVNVRLSAAQP
Sbjct: 121 ENASKIVYSKHSDLVPKIATADSEATADDEEYQKQIEETTERTKAALEKVVNVRLSAAQP 180

Query: 181 KNVPTHDSESKFIKYKPSQQSAAFNSGAKERIIRMSEMAQDPLEPPKFKHKRVPRAXXXX 240
           KNVPTHDSESKFIKYKPSQQSAAFNSGAKERIIRMSEMAQDPLEPPKFKHKRVPRA    
Sbjct: 181 KNVPTHDSESKFIKYKPSQQSAAFNSGAKERIIRMSEMAQDPLEPPKFKHKRVPRASGSP 240

Query: 241 XXXXXXXXXXXXTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFA 300
                       TVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFA
Sbjct: 241 PVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFA 300

Query: 301 KLSEALYVAEQKAREAVQMRSKVXXXXXXXXXXXXXXXXXALAQKARMEXXXXXXXXXXX 360
           KLSEALYVAEQKAREAVQMRSKV                 ALAQKARME           
Sbjct: 301 KLSEALYVAEQKAREAVQMRSKVQRELQLKEKERKEQELRALAQKARMERTGAPPAPTGV 360

Query: 361 XXXXXXXXXDDREEDMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 420
                    DDREEDMD                                          A
Sbjct: 361 PAGGGRGAVDDREEDMDLEQPREQRRESREEREARIERDRIREERRRERERERRLEARDA 420

Query: 421 AMGKKSKLTRDRDRDVSEKIALGMASTGGAKGGEVMYDQRLFNQDKGMDSGFATDDQYNI 480
           AMGKKSKLTRDRDRDVSEKIALGMASTGGAKGGEVMYDQRLFNQDKGMDSGFATDDQYNI
Sbjct: 421 AMGKKSKLTRDRDRDVSEKIALGMASTGGAKGGEVMYDQRLFNQDKGMDSGFATDDQYNI 480

Query: 481 YSKGLFTAQPTLSTLYRPKKDGDSDVYGDADEQLEKVMKTDRFKPDKGFSGASERSGKRD 540
           YSKGLFTAQPTLSTLYRPKKDGDSDVYGDADEQLEKVMKTDRFKPDKGFSGASERSGKRD
Sbjct: 481 YSKGLFTAQPTLSTLYRPKKDGDSDVYGDADEQLEKVMKTDRFKPDKGFSGASERSGKRD 540

Query: 541 RPVEFDKQEENDPFGLDQFLTEVKKGKKAVEKIXXXXXXXXXXXXXXXDDYEGGGSGRSR 600
           RPVEFDKQEENDPFGLDQFLTEVKKGKKAVEKI               DDYEGGGSGRSR
Sbjct: 541 RPVEFDKQEENDPFGLDQFLTEVKKGKKAVEKIGSGGAMRASGGSSMRDDYEGGGSGRSR 600

Query: 601 INFERGR 607
           INFERGR
Sbjct: 601 INFERGR 607



>Os06g0218000 
          Length = 540

 Score =  287 bits (735), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 174/353 (49%), Positives = 204/353 (57%), Gaps = 20/353 (5%)

Query: 8   LPTP-KAAASTFYDHSSDPWFKERYGGEXXXXXXXXXXXXXXXXXXXXXXYGKRGGFVPR 66
           LP P     +  +DH+ D WFKERY                         YG+R    PR
Sbjct: 5   LPDPSHGGGAPPHDHTEDEWFKERY----GGGGGGGDAPRSSRAVNPVPPYGRRSALAPR 60

Query: 67  RPEDFGDGGAFPEIHVAQYPLGMG---------RRDEKGGSKILALTVDAKGS-VAFDAV 116
           R EDFGDGGAFPE+HVAQYPL MG         +R   GG  +L+LTVD  G  V FDAV
Sbjct: 61  RKEDFGDGGAFPEVHVAQYPLDMGRRGGDGDGEQRGSSGG--VLSLTVDGSGGRVEFDAV 118

Query: 117 VKQGENASKIVYSKHSDLVPKIXXXXXXXXXXXXXYQKQIEETTERTKAALEKVVNVRLS 176
           V+QGENA K VYS   D++PKI              Q  +EETT RT AAL  +V  RLS
Sbjct: 119 VRQGENAGKTVYSSPGDVLPKINAAAADADDDE---QAAVEETTARTSAALRAIVEKRLS 175

Query: 177 AAQPKNVPTHDSESKFIKYKPSQQSAAFNSGAKERIIRMSEMAQDPLEPPKFKHKRVPRA 236
           A QP N    + + +FIKY P++Q++AFNSGA ERIIRM E  QDPLEPPKFKHKRVP  
Sbjct: 176 AVQPSNTLASNHDPEFIKYTPARQTSAFNSGAAERIIRMGETQQDPLEPPKFKHKRVPAP 235

Query: 237 XXXXXXXXXXXXXXXXTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQIN 296
                           + KD  DWK+PP IS+WKNPKGY+IPLDKR A DGRGL +VQ++
Sbjct: 236 AGSPPVPVLRSPPRPPSQKDHDDWKVPPSISSWKNPKGYSIPLDKRAALDGRGLHDVQVS 295

Query: 297 DNFAKLSEALYVAEQKAREAVQMRSKVXXXXXXXXXXXXXXXXXALAQKARME 349
           D FA L+EALY AEQKAREAV+ R+KV                  LA KAR E
Sbjct: 296 DAFAALAEALYAAEQKAREAVETRAKVHTEMKMREKEKAEQHLLQLATKARAE 348




 Score =  190 bits (482), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 105/149 (70%), Positives = 116/149 (77%), Gaps = 6/149 (4%)

Query: 424 KKSKLTRDRDRDVSEKIALGMASTGGAKGGEVMYDQRLFNQDKGMDSGFATDDQYNIYSK 483
           KKS  TRDRDRDVSE+IALGMA+TGG  G EV YDQRLFNQ+KGM SGFA DDQYN+YS 
Sbjct: 391 KKSAATRDRDRDVSERIALGMANTGGGGG-EVTYDQRLFNQEKGMGSGFAGDDQYNVYSG 449

Query: 484 GLFTAQPTLSTLYRPKKDG--DSDVYGDADEQLEKVMKTDRFKPDKGFSG--ASERSGKR 539
            LF AQP LSTLY+P K G  D D YGDADE L K+ KT RF PDK F+G  AS  +GKR
Sbjct: 450 RLFAAQPALSTLYKPSKHGEEDPDAYGDADEHLGKIAKTRRFVPDKAFTGAPASVAAGKR 509

Query: 540 DRPVEFDKQE-ENDPFGLDQFLTEVKKGK 567
           +RPVEFD  E E DPF LDQFLT++KKGK
Sbjct: 510 ERPVEFDGPEMEEDPFHLDQFLTQMKKGK 538



>Os10g0339266 
          Length = 346

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 63/70 (90%), Gaps = 3/70 (4%)

Query: 57  YGKRGGFVPRRPEDFGDGGAFPEIHVAQYPLGMGRRDEKGGSKILALTVDAKGSVAFDAV 116
           YGKRGGFVPR PEDFGDG AFPEIHVAQ PLGMGRRDEK GSKILALTV+AKGSVAFDAV
Sbjct: 31  YGKRGGFVPRWPEDFGDGRAFPEIHVAQCPLGMGRRDEKSGSKILALTVNAKGSVAFDAV 90

Query: 117 VKQ---GENA 123
           VKQ   GE+A
Sbjct: 91  VKQDAVGEDA 100




 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/44 (88%), Positives = 40/44 (90%)

Query: 80  IHVAQYPLGMGRRDEKGGSKILALTVDAKGSVAFDAVVKQGENA 123
           IHVAQY  GMGR+DEKGGSKILALTVD KGSVAFDAVVKQ ENA
Sbjct: 212 IHVAQYAPGMGRQDEKGGSKILALTVDTKGSVAFDAVVKQDENA 255



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,593,828
Number of extensions: 639543
Number of successful extensions: 1072
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1060
Number of HSP's successfully gapped: 6
Length of query: 607
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 500
Effective length of database: 11,448,903
Effective search space: 5724451500
Effective search space used: 5724451500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)