BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0744800 Os02g0744800|AK110575
(284 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0744800 Conserved hypothetical protein 259 2e-69
Os06g0229900 Similar to Starch synthase IIa (EC 2.4.1.21) (... 145 4e-35
>Os02g0744800 Conserved hypothetical protein
Length = 284
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/272 (59%), Positives = 162/272 (59%)
Query: 1 ASPTQSRPREKARPSTAGSRGVAKNTTSSPXXXXXXXXXXXXXXXXXPAEVLRHAXXXXX 60
ASPTQSRPREKARPSTAGSRGVAKNTTSSP PAEVLRHA
Sbjct: 1 ASPTQSRPREKARPSTAGSRGVAKNTTSSPLVLGLDEDVLVELGGVVPAEVLRHAARLEP 60
Query: 61 XXXXXXXXXXXXXXXXXXDHPVRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
DHPVRLG
Sbjct: 61 PPALLVVPVRVEAVPERVDHPVRLGAVERPPEPRVGERVERRHRVAEPAHGVHHGHGAVR 120
Query: 121 XXXQLVQPARLEPRRHQEDVGARRDPVRQLHREPHPPAHLVVVLRLEPPQHLLQVRPPRA 180
QLVQPARLEPRRHQEDVGARRDPVRQLHREPHPPAHLVVVLRLEPPQHLLQVRPPRA
Sbjct: 121 HGVQLVQPARLEPRRHQEDVGARRDPVRQLHREPHPPAHLVVVLRLEPPQHLLQVRPPRA 180
Query: 181 QHHHLHVLPGDPRHRVADDVHALLVVEPPDEPDQRHVVADXXXXXXXXXXXXXXXXGVQR 240
QHHHLHVLPGDPRHRVADDVHALLVVEPPDEPDQRHVVAD GVQR
Sbjct: 181 QHHHLHVLPGDPRHRVADDVHALLVVEPPDEPDQRHVVADLQAQLPLQRLLALFLAGVQR 240
Query: 241 LERXXXXXXXXXXXXXXXXPFGHVDAVHDALQ 272
LER PFGHVDAVHDALQ
Sbjct: 241 LERVVGVAVGLQVLVHLGVPFGHVDAVHDALQ 272
>Os06g0229900 Similar to Starch synthase IIa (EC 2.4.1.21) (Fragment)
Length = 343
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 93/148 (62%)
Query: 124 QLVQPARLEPRRHQEDVGARRDPVRQLHREPHPPAHLVVVLRLEPPQHLLQVRPPRAQHH 183
+LV+ ARLEPRRH + VGARRDPVR LHREPHPPAHL VVLRLEP QH LQV AQ H
Sbjct: 99 ELVEAARLEPRRHDQHVGARRDPVRHLHREPHPPAHLAVVLRLEPLQHHLQVAAAGAQQH 158
Query: 184 HLHVLPGDPRHRVADDVHALLVVEPPDEPDQRHVVADXXXXXXXXXXXXXXXXGVQRLER 243
LHVLPGDPRHRVADDVH L VEPPDEPDQRHVVA GVQR
Sbjct: 159 QLHVLPGDPRHRVADDVHTFLPVEPPDEPDQRHVVAHLQPQLALQRRLAPRLAGVQRGHG 218
Query: 244 XXXXXXXXXXXXXXXXPFGHVDAVHDAL 271
P VDAVHDA+
Sbjct: 219 VVGVAVGLQVHVHLRVPLPVVDAVHDAV 246
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,094,029
Number of extensions: 284770
Number of successful extensions: 1069
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1060
Number of HSP's successfully gapped: 2
Length of query: 284
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 184
Effective length of database: 11,814,401
Effective search space: 2173849784
Effective search space used: 2173849784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)