BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0743800 Os02g0743800|AK064134
(357 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0743800 CS domain containing protein 565 e-161
Os06g0231300 HSP20-like chaperone domain containing protein 194 1e-49
AK108973 115 5e-26
>Os02g0743800 CS domain containing protein
Length = 357
Score = 565 bits (1456), Expect = e-161, Method: Compositional matrix adjust.
Identities = 291/357 (81%), Positives = 291/357 (81%)
Query: 1 MVVTIDLREVTIDLREEDEXXXXXXXXXXXGRSDEEVLAAVLARKGGPVPFLQXXXXXXX 60
MVVTIDLREVTIDLREEDE GRSDEEVLAAVLARKGGPVPFLQ
Sbjct: 1 MVVTIDLREVTIDLREEDEAAAAAAMKAIAGRSDEEVLAAVLARKGGPVPFLQAAIDAAA 60
Query: 61 XXXXXXXXGRSDEEVLAAVLARKGGPVPFLQAAIDVAQRRSDLFLDPSAPGVVXXXXXXX 120
GRSDEEVLAAVLARKGGPVPFLQAAIDVAQRRSDLFLDPSAPGVV
Sbjct: 61 AAATKAIAGRSDEEVLAAVLARKGGPVPFLQAAIDVAQRRSDLFLDPSAPGVVAEMAVEA 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXMLKEEEPMKAEEMLKEEEPMKAEEMLKEEPRTPMREAG 180
MLKEEEPMKAEEMLKEEEPMKAEEMLKEEPRTPMREAG
Sbjct: 121 QAKAEAEERRKRAKGEPRKAEEMLKEEEPMKAEEMLKEEEPMKAEEMLKEEPRTPMREAG 180
Query: 181 RDKXXXXXXXXXXXDPKPNAGNGLDLEKYSWTQERPEVTITIPVPQGTKSSLVTYEIMKN 240
RDK DPKPNAGNGLDLEKYSWTQERPEVTITIPVPQGTKSSLVTYEIMKN
Sbjct: 181 RDKVERAAVVERVRDPKPNAGNGLDLEKYSWTQERPEVTITIPVPQGTKSSLVTYEIMKN 240
Query: 241 HLKVGLKGCSFIIDGELFEPVKVNDCLWTIEDGNTLSILLTKENQKEWWTSVIKGDPELD 300
HLKVGLKGCSFIIDGELFEPVKVNDCLWTIEDGNTLSILLTKENQKEWWTSVIKGDPELD
Sbjct: 241 HLKVGLKGCSFIIDGELFEPVKVNDCLWTIEDGNTLSILLTKENQKEWWTSVIKGDPELD 300
Query: 301 PRDMKVPELRDCDVEAKETIVRILSHGLPKRAMDPATSDDIQQEELLKNAQYSHMDS 357
PRDMKVPELRDCDVEAKETIVRILSHGLPKRAMDPATSDDIQQEELLKNAQYSHMDS
Sbjct: 301 PRDMKVPELRDCDVEAKETIVRILSHGLPKRAMDPATSDDIQQEELLKNAQYSHMDS 357
>Os06g0231300 HSP20-like chaperone domain containing protein
Length = 308
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 126/165 (76%), Gaps = 7/165 (4%)
Query: 197 KPNAGNGLDLEKYSWTQERPEVTITIPVPQGTKSSLVTYEIMKNHLKVGLKGCSFIIDGE 256
KPNAGNGLDLEKYSW Q+ PEVTIT+PVPQGTKS V +I KNHLKVGLKG IIDGE
Sbjct: 139 KPNAGNGLDLEKYSWIQQLPEVTITVPVPQGTKSRFVVCDIKKNHLKVGLKGQPPIIDGE 198
Query: 257 LFEPVKVNDCLWTIEDGNTLSILLTKENQKEWWTSVIKGDPELDPRDMKVPE---LRDCD 313
LF+PVKV+DC W+IEDG +LSILLTK+NQ EWW SV+KGDPE+D + ++ PE L D D
Sbjct: 199 LFKPVKVDDCFWSIEDGKSLSILLTKQNQMEWWKSVVKGDPEVDTQKVE-PENSKLADLD 257
Query: 314 VEAKETIVRILSHGLPKRAMDPATSDDIQQEELLKN--AQYSHMD 356
E ++T+ +++ K+ M TSD++Q++++LK AQ+ MD
Sbjct: 258 PETRQTVEKMMFDQRQKQ-MGLPTSDEMQKQDMLKKFMAQHPEMD 301
>AK108973
Length = 333
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 101/161 (62%), Gaps = 6/161 (3%)
Query: 197 KPNAGNGLDLEKYSWTQERPEVTITIPVPQGTKSSLVTYEIMKNHLKVGLKGCSFIIDGE 256
KPNAG G DLE YSW+Q EV++++PV +G K+ + I K HL+VG+KG I+DG
Sbjct: 165 KPNAGRGADLEAYSWSQTLQEVSVSVPVGRGLKAKQLDVAISKQHLRVGVKGQPPILDGA 224
Query: 257 LFEPVKVNDCLWTIEDGNTLSILLTKENQKEWWTSVIKGDPELDPRDMKVPE---LRDCD 313
L EP+K ++ +W + DG + + L+K WW++V+ G P +D + ++ PE L D D
Sbjct: 225 LAEPIKADEAMWNLVDG-VVELTLSKAEGMHWWSAVMAGGPAIDVQAVE-PENSKLTDLD 282
Query: 314 VEAKETIVRILSHGLPKRAMDPATSDDIQQEELLKNAQYSH 354
E ++T+ +++ ++A+ TS++ Q++E+LK +H
Sbjct: 283 PETRQTVEKMM-FDQRQKALGLPTSEETQKQEMLKRFMAAH 322
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,804,076
Number of extensions: 431182
Number of successful extensions: 863
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 854
Number of HSP's successfully gapped: 3
Length of query: 357
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 255
Effective length of database: 11,709,973
Effective search space: 2986043115
Effective search space used: 2986043115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)