BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0741400 Os02g0741400|AK060525
         (363 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0741400  Conserved hypothetical protein                      617   e-177

>Os02g0741400 Conserved hypothetical protein
          Length = 363

 Score =  617 bits (1592), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 320/349 (91%), Positives = 320/349 (91%)

Query: 1   MERETPGGVSALQPSSRKRLIPSPQTRDDASQGETTDANPPLKKPKEGSSQCTSELKTEQ 60
           MERETPGGVSALQPSSRKRLIPSPQTRDDASQGETTDANPPLKKPKEGSSQCTSELKTEQ
Sbjct: 1   MERETPGGVSALQPSSRKRLIPSPQTRDDASQGETTDANPPLKKPKEGSSQCTSELKTEQ 60

Query: 61  SPHEDVMAPVPVLPSTELDEQQPGEEMDTDQSSLPVEEVEETREDDLGDKDDMETHIDAS 120
           SPHEDVMAPVPVLPSTELDEQQPGEEMDTDQSSLPVEEVEETREDDLGDKDDMETHIDAS
Sbjct: 61  SPHEDVMAPVPVLPSTELDEQQPGEEMDTDQSSLPVEEVEETREDDLGDKDDMETHIDAS 120

Query: 121 MDIQGQDAETGIDNDATTVEDVPVKSEAVMESLEEDLKTEDGKEEGQFTATTDVXXXXXX 180
           MDIQGQDAETGIDNDATTVEDVPVKSEAVMESLEEDLKTEDGKEEGQFTATTDV      
Sbjct: 121 MDIQGQDAETGIDNDATTVEDVPVKSEAVMESLEEDLKTEDGKEEGQFTATTDVEDEREE 180

Query: 181 XXXXXXXXXXXSTPPVLDVGEQAGDSFRAASPAGPTEKSDVDMPEETGEGDGTMESDQSP 240
                      STPPVLDVGEQAGDSFRAASPAGPTEKSDVDMPEETGEGDGTMESDQSP
Sbjct: 181 GELPDEPEQPDSTPPVLDVGEQAGDSFRAASPAGPTEKSDVDMPEETGEGDGTMESDQSP 240

Query: 241 VPQSGGADASPSQMADASPSPAREPSPNPVQAGAXXXXXXXXXXXXVQAGASSEQQNPAT 300
           VPQSGGADASPSQMADASPSPAREPSPNPVQAGA            VQAGASSEQQNPAT
Sbjct: 241 VPQSGGADASPSQMADASPSPAREPSPNPVQAGAPPEQQNPTPPNPVQAGASSEQQNPAT 300

Query: 301 AAEGVETRSTRTINLTERARQNRQARILRSATQQNARGRGNQSLTYRKD 349
           AAEGVETRSTRTINLTERARQNRQARILRSATQQNARGRGNQSLTYRKD
Sbjct: 301 AAEGVETRSTRTINLTERARQNRQARILRSATQQNARGRGNQSLTYRKD 349



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.300    0.120    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,632,019
Number of extensions: 641269
Number of successful extensions: 3729
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3723
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 261
Effective length of database: 11,709,973
Effective search space: 3056302953
Effective search space used: 3056302953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 157 (65.1 bits)