Os02g0741400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0741400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.5 | 0.246 | 11.7 | 1.54 | 0.195 | -0.49 | -0.054 | 2.13 | 0.651 | 3.14 | 20.45 | 1310 | -- | -- |
| 30.55 | 0.257 | 11.8 | 1.09 | 0.175 | -0.489 | 0.124 | -- | 0.562 | 3.73 | 16.85 | 10270 | -- | -- |
| 27.51 | 0.244 | 11.7 | 1.54 | 0.193 | -0.489 | -- | 2.12 | 0.651 | 3.14 | 20.51 | 1320 | -- | -- |
| 30.07 | 0.255 | 11.8 | 1.15 | 0.164 | -0.576 | -- | -- | 0.57 | 3.17 | 12.5 | 10738 | -- | -- |
| 28.52 | 0.249 | 11.7 | 1.59 | -- | -0.515 | -- | 2.25 | 0.667 | -- | 21.1 | 1746 | -- | -- |
| 35.37 | 0.279 | 11.8 | 0.79 | 0.154 | -- | 0.0704 | -- | 0.394 | 3.44 | -- | -- | -- | -- |
| 35.38 | 0.279 | 11.8 | 0.789 | 0.154 | -- | -- | -- | 0.393 | 3.53 | -- | -- | -- | -- |
| 31.69 | 0.262 | 11.8 | 1.13 | -- | -0.55 | -- | -- | 0.571 | -- | 12.46 | 10528 | -- | -- |
| 44.01 | 0.309 | 11.9 | -- | 0.176 | 0.427 | -- | -- | 0.17 | 4.58 | 17.17 | 47520 | -- | -- |
| 36.71 | 0.283 | 11.8 | 0.796 | -- | -- | -- | -- | 0.397 | -- | -- | -- | -- | -- |
| 51.79 | 0.337 | 11.8 | -- | 0.17 | -- | -- | -- | 0.305 | 3.51 | -- | -- | -- | -- |
| 45.11 | 0.313 | 11.9 | -- | -- | 0.434 | -- | -- | 0.159 | -- | 18.2 | 47520 | -- | -- |
| 53.41 | 0.341 | 11.8 | -- | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.06 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 2 | 26.13 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 4 | 26.18 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 7 | 26.26 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 18 | 26.29 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 23 | 26.33 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 33 | 26.39 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 45 | 26.46 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 48 | 26.48 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 57 | 26.51 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 59 | 26.52 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 76 | 26.58 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 106 | 26.68 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 137 | 26.72 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 165 | 26.80 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 14 | 9 |
| 177 | 26.83 | humidity | 90.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 178 | 26.83 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 186 | 26.84 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 206 | 26.87 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 258 | 26.93 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 268 | 26.94 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 336 | 27.02 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 340 | 27.02 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 16 | NA |
| 371 | 27.05 | humidity | 80.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 390 | 27.06 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 455 | 27.12 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 516 | 27.16 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 580 | 27.21 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 605 | 27.23 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 684 | 27.26 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 685 | 27.27 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 727 | 27.29 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 737 | 27.30 | humidity | 90.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 738 | 27.30 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 750 | 27.31 | humidity | 80.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 820 | 27.34 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 862 | 27.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 869 | 27.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 922 | 27.41 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 923 | 27.41 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 929 | 27.41 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 964 | 27.43 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 8 |