BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0726400 Os02g0726400|AK101892
(303 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0726400 BSD domain containing protein 435 e-122
Os02g0187900 98 6e-21
Os04g0662000 BSD domain containing protein 91 7e-19
>Os02g0726400 BSD domain containing protein
Length = 303
Score = 435 bits (1119), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/251 (86%), Positives = 217/251 (86%)
Query: 1 MDLWERARAFAGEAAKRSQELSAEAAKRSSALVSETAKKSKEIFSETATKSREIAAEATK 60
MDLWERARAFAGEAAKRSQELSAEAAKRSSALVSETAKKSKEIFSETATKSREIAAEATK
Sbjct: 1 MDLWERARAFAGEAAKRSQELSAEAAKRSSALVSETAKKSKEIFSETATKSREIAAEATK 60
Query: 61 QADLLAGQIKRLSTDLXXXXXXXXXXXXXXXXXXXDAAELERYGITEDLREFVKGMTIST 120
QADLLAGQIKRLSTDL DAAELERYGITEDLREFVKGMTIST
Sbjct: 61 QADLLAGQIKRLSTDLPVPSIPAIPPIPTAVAPEPDAAELERYGITEDLREFVKGMTIST 120
Query: 121 FRDFPLQDEPEMSDVPTVSNVRQDLNEWQARHATLVLSAVKEISKFRYELCPRYMKERKF 180
FRDFPLQDEPEMSDVPTVSNVRQDLNEWQARHATLVLSAVKEISKFRYELCPRYMKERKF
Sbjct: 121 FRDFPLQDEPEMSDVPTVSNVRQDLNEWQARHATLVLSAVKEISKFRYELCPRYMKERKF 180
Query: 181 WRVYFLLVNNYTSLYENKYFEELXXXXXXXXXXXXXXXTETSQATTAEHKDMKVQSKTST 240
WRVYFLLVNNYTSLYENKYFEEL TETSQATTAEHKDMKVQSKTST
Sbjct: 181 WRVYFLLVNNYTSLYENKYFEELKVKAEEEKMDAKKEVTETSQATTAEHKDMKVQSKTST 240
Query: 241 STNPEHDLDVF 251
STNPEHDLDVF
Sbjct: 241 STNPEHDLDVF 251
>Os02g0187900
Length = 123
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 56/86 (65%)
Query: 32 LVSETAKKSKEIFSETATKSREIAAEATKQADLLAGQIKRLSTDLXXXXXXXXXXXXXXX 91
++ ETAKK KEIFSET T S+EI AEA KQADLL QIK L+TDL
Sbjct: 1 MMLETAKKFKEIFSETTTNSQEITAEANKQADLLVNQIKHLTTDLPVPSIPAIPHIPSAV 60
Query: 92 XXXXDAAELERYGITEDLREFVKGMT 117
DAA+LE YGI EDLREFVKGMT
Sbjct: 61 TPKPDAAKLEHYGIIEDLREFVKGMT 86
>Os04g0662000 BSD domain containing protein
Length = 203
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 16/114 (14%)
Query: 99 ELERYGITEDLREFVKGMTISTFRDFPLQDEPE---------MSDVPTVSNVRQD----- 144
E E G+T L +F++ ++ +F+ LQ + +S P S + +D
Sbjct: 40 EEEELGVTPQLLDFLRTLSPDSFKSSALQLQGNSHTLAISISISSFPLRSGLDRDVRVEA 99
Query: 145 --LNEWQARHATLVLSAVKEISKFRYELCPRYMKERKFWRVYFLLVNNYTSLYE 196
L WQ RHA LVLS KE++K RY+LCPR+MK+++FWR+YFLL +YTS YE
Sbjct: 100 GELTGWQERHAVLVLSKAKELAKIRYDLCPRHMKDKQFWRIYFLLAKSYTSPYE 153
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.125 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,750,695
Number of extensions: 164240
Number of successful extensions: 671
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 669
Number of HSP's successfully gapped: 3
Length of query: 303
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 203
Effective length of database: 11,814,401
Effective search space: 2398323403
Effective search space used: 2398323403
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)