BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0725200 Os02g0725200|AK103602
         (502 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0725200  Rubisco methyltransferase family protein            899   0.0  
Os12g0236900  Nuclear protein SET domain containing protein        97   2e-20

>Os02g0725200 Rubisco methyltransferase family protein
          Length = 502

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/479 (93%), Positives = 447/479 (93%)

Query: 24  QHLALPSGVLIRSPVRXXXXXXXXXXXXXXXXXXXGVPWGCEIESLESAVSLERWLTDSG 83
           QHLALPSGVLIRSPVR                   GVPWGCEIESLESAVSLERWLTDSG
Sbjct: 24  QHLALPSGVLIRSPVRASAASASASAPAQREAAAAGVPWGCEIESLESAVSLERWLTDSG 83

Query: 84  LPEQRLGIQRVDVGERGLVALKNIRKGEKLLFVPPSLVITADSEWGCPEVGNVLKRNSVP 143
           LPEQRLGIQRVDVGERGLVALKNIRKGEKLLFVPPSLVITADSEWGCPEVGNVLKRNSVP
Sbjct: 84  LPEQRLGIQRVDVGERGLVALKNIRKGEKLLFVPPSLVITADSEWGCPEVGNVLKRNSVP 143

Query: 144 DWPLIATYLIXXXXXXXXXXXXXYIAALPRQPYSLLYWTRPELDAYLVASPIRERAIQRI 203
           DWPLIATYLI             YIAALPRQPYSLLYWTRPELDAYLVASPIRERAIQRI
Sbjct: 144 DWPLIATYLISEASLESSSRWSSYIAALPRQPYSLLYWTRPELDAYLVASPIRERAIQRI 203

Query: 204 TDVVGTYNDLRDRIFSKHSDLFPEEVYNLETFRWSFGILFSRLVRLPSMDGRVALVPWAD 263
           TDVVGTYNDLRDRIFSKHSDLFPEEVYNLETFRWSFGILFSRLVRLPSMDGRVALVPWAD
Sbjct: 204 TDVVGTYNDLRDRIFSKHSDLFPEEVYNLETFRWSFGILFSRLVRLPSMDGRVALVPWAD 263

Query: 264 MLNHSPEVETFLDYDKSSGGIVFTTDRSYQPGEQVFISYGKKSSGELLLSYGFVPKEGTN 323
           MLNHSPEVETFLDYDKSSGGIVFTTDRSYQPGEQVFISYGKKSSGELLLSYGFVPKEGTN
Sbjct: 264 MLNHSPEVETFLDYDKSSGGIVFTTDRSYQPGEQVFISYGKKSSGELLLSYGFVPKEGTN 323

Query: 324 PNDSVELLVSLNKSDKCYKEKLQALKRNGLSEFESFPLRVTGWPVELMAYAFLVVSPPEM 383
           PNDSVELLVSLNKSDKCYKEKLQALKRNGLSEFESFPLRVTGWPVELMAYAFLVVSPPEM
Sbjct: 324 PNDSVELLVSLNKSDKCYKEKLQALKRNGLSEFESFPLRVTGWPVELMAYAFLVVSPPEM 383

Query: 384 SQRFEEMAVAASNKSPSKPGLNYPELEEQALQFILDCCESNIAKYTKFLEGSSGSLQLST 443
           SQRFEEMAVAASNKSPSKPGLNYPELEEQALQFILDCCESNIAKYTKFLEGSSGSLQLST
Sbjct: 384 SQRFEEMAVAASNKSPSKPGLNYPELEEQALQFILDCCESNIAKYTKFLEGSSGSLQLST 443

Query: 444 NSKQANRTLLLKQLARDLCISERRILYRTQYILRRRLRDMRGGELKALSLFNGLRKLFK 502
           NSKQANRTLLLKQLARDLCISERRILYRTQYILRRRLRDMRGGELKALSLFNGLRKLFK
Sbjct: 444 NSKQANRTLLLKQLARDLCISERRILYRTQYILRRRLRDMRGGELKALSLFNGLRKLFK 502



>Os12g0236900 Nuclear protein SET domain containing protein
          Length = 509

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 139/311 (44%), Gaps = 30/311 (9%)

Query: 78  WLTDSGLPEQRLGI---------QRVDVGERGLVALKNIRKGEKLLFVPPSLVITADSEW 128
           WL + GLP  ++ I         +  D+    + A +++  G+    VP SLV+T +   
Sbjct: 78  WLREHGLPPGKVAILDRPVPCFREGKDLPLHYVAAGQDLEAGDVAFEVPMSLVVTLERVL 137

Query: 129 GCPEVGNVLKRNSVPDWPLIATYLIXXXXXXXXXXXXXYIAALPRQ-------PYSLLYW 181
           G   V  +L  N + +   +A YL+             YI  L RQ         S L W
Sbjct: 138 GDESVAELLTTNKLSELACLALYLMYEKKQGQDSFWYPYIKELDRQRGRGQLAVESPLLW 197

Query: 182 TRPELDAYLVASPIRERAIQRITDVVGTYNDLRD------RIFSKHSDLFPEEVYNLETF 235
           T  EL+ YL  SPI++  + R   +   YN+L         +F ++    P E +  E F
Sbjct: 198 TESELN-YLKGSPIKDEVVARDEGIRREYNELDTLWFMAGSLFQQYPFDIPTEAFPFEIF 256

Query: 236 RWSFGILFSRLVRLP--SMDGRVALVPWAD-MLNHSPEVETFLDYDKSSGGIVFTTDRSY 292
           + +F  + S +V L   S+  R ALVP    +L +    +  L     S  +    DR Y
Sbjct: 257 KQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLTYKSNCKAMLTAVGDS--VRLVVDRPY 314

Query: 293 QPGEQVFISYGKKSSGELLLSYGFVPKEGTNPNDSVELLVSLNKSDKCYKEKLQALKRNG 352
           + GE + +  G + +  LLL+YGF+ ++  NP D + +  SLN  D  ++EK    +RNG
Sbjct: 315 KAGEPIIVWCGPQPNSRLLLNYGFIDED--NPYDRIVIEASLNIEDPQFQEKRMVAQRNG 372

Query: 353 LSEFESFPLRV 363
               ++F + V
Sbjct: 373 KLAIQNFHVCV 383



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,925,518
Number of extensions: 625739
Number of successful extensions: 1419
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1414
Number of HSP's successfully gapped: 2
Length of query: 502
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 397
Effective length of database: 11,553,331
Effective search space: 4586672407
Effective search space used: 4586672407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)