Os02g0725200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rubisco methyltransferase family protein.
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Os02g0725200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rubisco methyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.47 | 0.299 | 13.7 | 0.225 | 0.822 | -0.261 | -0.41 | -2.1 | -0.331 | 20.1 | 0.113 | 5489 | -- | -- |
| 40.48 | 0.296 | 13.7 | 0.295 | 0.807 | -0.677 | -0.469 | -- | -0.337 | 20 | 0.6511 | 16110 | -- | -- |
| 40.96 | 0.298 | 13.7 | 0.232 | 0.823 | -0.258 | -- | -2.07 | -0.333 | 20.1 | 0.1635 | 5483 | -- | -- |
| 40.77 | 0.297 | 13.7 | 0.299 | 0.829 | -0.687 | -- | -- | -0.356 | 20 | 0.5284 | 15994 | -- | -- |
| 78.03 | 0.411 | 13.7 | 0.248 | -- | -0.28 | -- | -2.12 | -0.345 | -- | 0.0996 | 5483 | -- | -- |
| 51.32 | 0.336 | 13.7 | 0.0302 | 0.826 | -- | -0.38 | -- | -0.292 | 20 | -- | -- | -- | -- |
| 51.75 | 0.337 | 13.7 | 0.0407 | 0.827 | -- | -- | -- | -0.293 | 20 | -- | -- | -- | -- |
| 78.54 | 0.413 | 13.7 | 0.295 | -- | -0.683 | -- | -- | -0.364 | -- | 0.4989 | 15539 | -- | -- |
| 42.68 | 0.304 | 13.7 | -- | 0.828 | -0.607 | -- | -- | -0.382 | 20.1 | 0.4496 | 16053 | -- | -- |
| 89.13 | 0.441 | 13.7 | 0.0329 | -- | -- | -- | -- | -0.303 | -- | -- | -- | -- | -- |
| 51.8 | 0.337 | 13.7 | -- | 0.826 | -- | -- | -- | -0.297 | 20 | -- | -- | -- | -- |
| 80.17 | 0.417 | 13.7 | -- | -- | -0.605 | -- | -- | -0.406 | -- | 0.4386 | 15638 | -- | -- |
| 89.16 | 0.441 | 13.7 | -- | -- | -- | -- | -- | -0.307 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.41 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 2 | 37.70 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 3 | 37.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 4 | 37.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 5 | 37.74 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 13 | 37.98 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 18 | 38.06 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 23 | 38.16 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 24 | 38.17 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 43 | 38.46 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 13 |
| 51 | 38.50 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 54 | 38.52 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 4 |
| 63 | 38.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 74 | 38.63 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 79 | 38.69 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 80 | 38.70 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 81 | 38.70 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 82 | 38.70 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 86 | 38.71 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 10 |
| 88 | 38.72 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 92 | 38.73 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 10 |
| 113 | 38.80 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 24 | 10 |
| 116 | 38.81 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 137 | 38.88 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 159 | 38.94 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 23 | NA |
| 164 | 38.95 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 5 |
| 170 | 38.96 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 13 |
| 172 | 38.98 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 178 | 38.99 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 193 | 39.02 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 23 | NA |
| 194 | 39.02 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 23 | NA |
| 197 | 39.02 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 23 | NA |
| 214 | 39.06 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 236 | 39.09 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 239 | 39.11 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 14 | 6 |
| 240 | 39.11 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 14 | 6 |
| 245 | 39.11 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 14 | 6 |
| 267 | 39.14 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 294 | 39.17 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 13 |
| 306 | 39.21 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 328 | 39.23 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 335 | 39.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 6 |
| 347 | 39.24 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 380 | 39.28 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 443 | 39.33 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 8 |
| 457 | 39.35 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 459 | 39.35 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 8 |
| 502 | 39.40 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 522 | 39.43 | wind | 1.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 535 | 39.46 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 560 | 39.49 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 564 | 39.50 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 612 | 39.55 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 623 | 39.55 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 19 |
| 637 | 39.57 | wind | 9.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 665 | 39.60 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 678 | 39.61 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 767 | 39.70 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 818 | 39.74 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 829 | 39.75 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 841 | 39.76 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 843 | 39.76 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 13 |
| 869 | 39.79 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 892 | 39.80 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 954 | 39.85 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 980 | 39.87 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 10 |