BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0724100 Os02g0724100|AK107565
         (242 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0724100  Conserved hypothetical protein                      360   e-100
Os02g0724400                                                       67   9e-12

>Os02g0724100 Conserved hypothetical protein
          Length = 242

 Score =  360 bits (925), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/242 (77%), Positives = 188/242 (77%)

Query: 1   MESGSMDITAIDDPKEFDMLLGRWHPIEGSSGYDGSPFCEKRIQIVTGKXXXXXXXXXXX 60
           MESGSMDITAIDDPKEFDMLLGRWHPIEGSSGYDGSPFCEKRIQIVTGK           
Sbjct: 1   MESGSMDITAIDDPKEFDMLLGRWHPIEGSSGYDGSPFCEKRIQIVTGKTTTPPPPPATP 60

Query: 61  XXXXXXXXXXXXXXVRHRTPKENARLRYVDSGRQRRAAEGCTPLGXXXXXXXXXXXXXXX 120
                         VRHRTPKENARLRYVDSGRQRRAAEGCTPLG               
Sbjct: 61  LCAAARGRFAACPAVRHRTPKENARLRYVDSGRQRRAAEGCTPLGRSRDVRRHRRVYRIT 120

Query: 121 XFAAVDHDSFAARGAEGTMLLHRHVQRSVVDGRASRISVGCRIKHHRLSGLVPAAETGAT 180
            FAAVDHDSFAARGAEGTMLLHRHVQRSVVDGRASRISVGCRIKHHRLSGLVPAAETGAT
Sbjct: 121 VFAAVDHDSFAARGAEGTMLLHRHVQRSVVDGRASRISVGCRIKHHRLSGLVPAAETGAT 180

Query: 181 CPPPAADSAAMEGGVAESESPPPPQHPLADALASSLDSCTLASDTXXXXXXXXXXXXXFM 240
           CPPPAADSAAMEGGVAESESPPPPQHPLADALASSLDSCTLASDT             FM
Sbjct: 181 CPPPAADSAAMEGGVAESESPPPPQHPLADALASSLDSCTLASDTADPGDGDLALDLPFM 240

Query: 241 SV 242
           SV
Sbjct: 241 SV 242



>Os02g0724400 
          Length = 281

 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 69/131 (52%), Gaps = 15/131 (11%)

Query: 125 VDHDSFAARGAEGTMLLHRH-------VQRSVVDGRASRISVGCRIKHHRLSGLVP-AAE 176
           V H  F AR  E  + LHRH       + RSV  GR S I +  R    R SGLVP AA+
Sbjct: 153 VYHRPFTARDDEELVRLHRHTGGSWRKISRSVY-GRTSAI-MRDRWIQLRRSGLVPDAAK 210

Query: 177 T--GATCPPPAADSAAMEGGVAESESPPPPQHP---LADALASSLDSCTLASDTXXXXXX 231
           T   A CPPPAAD +   G  AE +SPPPP      LAD LASSLDSCTLASD       
Sbjct: 211 TAENAGCPPPAADDSEYMGSEAELKSPPPPPQQQHPLADVLASSLDSCTLASDATDPRDG 270

Query: 232 XXXXXXXFMSV 242
                  FMSV
Sbjct: 271 ILALDFAFMSV 281



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,532,139
Number of extensions: 291039
Number of successful extensions: 3199
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3194
Number of HSP's successfully gapped: 2
Length of query: 242
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 144
Effective length of database: 11,918,829
Effective search space: 1716311376
Effective search space used: 1716311376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)