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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0724100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0431) R2 : 0.00639
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.155 (0.0907) R2dN8 : 0.00826 R2N8 : 0.00639
σ : 0.812
deviance : 302.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
274.45 0.778 3.31 -0.617 0.309 -0.197 0.889 3.36 -0.281 5.46 29.99 2570 -- --
284.65 0.792 3.31 -0.393 0.267 0.296 1.53 -- -0.217 8.13 9.916 2427 -- --
275.89 0.774 3.31 -0.6 0.329 -0.201 -- 3.32 -0.284 5.09 29.97 2554 -- --
291.7 0.801 3.31 -0.348 0.26 0.274 -- -- -0.217 7.42 9.916 2427 -- --
281.47 0.781 3.31 -0.61 -- -0.174 -- 3.4 -0.278 -- 29.95 2554 -- --
291.42 0.8 3.3 -0.354 0.153 -- 1.61 -- -0.19 7.25 -- -- -- --
294.15 0.803 3.31 -0.33 0.315 -- -- -- -0.199 3.47 -- -- -- --
294.95 0.803 3.31 -0.338 -- 0.215 -- -- -0.208 -- 9.916 2427 -- --
294.88 0.804 3.3 -- 0.25 0.255 -- -- -0.177 7.23 9.916 2427 -- --
299.7 0.809 3.31 -0.317 -- -- -- -- -0.191 -- -- -- -- --
297.01 0.806 3.3 -- 0.308 -- -- -- -0.162 3.47 -- -- -- --
297.96 0.807 3.3 -- -- 0.207 -- -- -0.17 -- 9.916 2427 -- --
302.34 0.812 3.3 -- -- -- -- -- -0.155 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 257.80 wind 1.0 90 < th dose dependent rect. 8 1
2 261.31 wind 1.0 90 < th dose independent rect. 8 1
3 267.21 radiation 10.0 90 < th dose dependent rect. 8 2
4 269.05 wind 9.0 30 > th dose independent rect. 13 5
6 269.17 wind 9.0 30 > th dose dependent rect. 13 9
32 269.21 wind 9.0 30 > th dose dependent rect. 13 6
45 269.79 wind 9.0 90 > th dose independent rect. 13 3
47 269.82 wind 9.0 90 > th dose dependent rect. 13 3
48 269.85 wind 9.0 30 > th dose independent rect. 15 3
83 269.97 wind 9.0 30 > th dose dependent rect. 15 7
109 270.06 wind 9.0 30 > th dose dependent rect. 15 4
115 270.12 wind 9.0 10 > th dose dependent rect. 13 3
166 270.69 wind 9.0 90 > th dose dependent rect. 15 1
167 270.70 wind 9.0 90 > th dose independent rect. 15 1
170 270.80 wind 9.0 30 > th dose independent rect. 15 7
198 270.97 wind 9.0 10 > th dose independent rect. 15 1
210 270.97 wind 9.0 10 > th dose dependent rect. 15 1
258 271.94 wind 9.0 30 > th dose dependent sin 14 NA
272 274.01 radiation 20.0 4320 < th dose independent rect. 17 11
275 274.69 wind 9.0 30 < th dose independent sin 12 NA
280 275.06 humidity 70.0 270 < th dose independent rect. 12 8
291 275.10 humidity 70.0 270 < th dose independent rect. 12 4
299 275.49 atmosphere 995.0 30 > th dose dependent rect. 12 18
309 275.90 wind 1.0 30 > th dose dependent rect. 12 18
310 275.93 humidity 70.0 720 < th dose independent rect. 12 1
311 275.99 wind 9.0 30 > th dose independent sin 13 NA
312 276.00 radiation 20.0 4320 < th dose independent rect. 17 6
314 276.01 wind 9.0 30 < th dose independent sin 14 NA
319 276.12 humidity 90.0 30 < th dose independent rect. 10 23
334 276.19 radiation 10.0 90 < th dose independent rect. 8 2
335 276.21 radiation 40.0 270 > th dose dependent rect. 13 2
340 276.28 radiation 40.0 720 < th dose independent rect. 13 16
342 276.32 atmosphere 1000.0 30 > th dose independent rect. 12 18
379 276.50 radiation 40.0 1440 < th dose independent rect. 12 2
420 276.65 radiation 10.0 90 < th dose dependent rect. 3 7
424 276.72 wind 1.0 30 > th dose dependent rect. 14 16
432 276.85 humidity 70.0 90 < th dose independent sin 14 NA
433 276.85 temperature 30.0 30 < th dose independent rect. 12 18
439 276.96 radiation 20.0 720 > th dose independent rect. 12 2
447 277.13 radiation 20.0 4320 < th dose independent rect. 17 1
456 277.22 wind 1.0 30 > th dose independent rect. 12 18
459 277.27 humidity 80.0 90 > th dose dependent rect. 3 2
460 277.30 humidity 70.0 90 < th dose independent rect. 14 17
479 277.47 radiation 20.0 4320 < th dose independent rect. 17 3
492 277.56 humidity 70.0 90 < th dose independent rect. 14 6
508 277.61 radiation 30.0 270 > th dose dependent sin 14 NA
510 277.64 humidity 90.0 90 > th dose independent rect. 3 2
541 277.68 humidity 50.0 90 > th dose independent rect. 12 18
547 277.70 radiation 1.0 720 > th dose dependent rect. 12 1
549 277.72 wind 1.0 30 > th dose independent rect. 6 6
568 277.85 temperature 15.0 30 > th dose independent rect. 12 18
592 277.93 radiation 40.0 270 < th dose independent sin 14 NA
595 277.95 humidity 90.0 30 < th dose dependent rect. 12 12
598 277.96 temperature 15.0 720 > th dose independent rect. 12 8
600 277.97 radiation 10.0 30 > th dose independent rect. 17 19
604 278.00 temperature 15.0 720 > th dose independent rect. 8 16
617 278.06 wind 9.0 30 < th dose independent rect. 6 6
626 278.15 temperature 10.0 1440 > th dose independent rect. 7 6
630 278.15 atmosphere 995.0 1440 > th dose independent rect. 7 6
632 278.15 atmosphere 1015.0 720 < th dose independent rect. 12 8
633 278.15 temperature 10.0 720 > th dose independent rect. 20 16
634 278.15 atmosphere 995.0 720 > th dose independent rect. 20 16
636 278.15 temperature 10.0 1440 > th dose independent rect. 13 18
643 278.16 wind 9.0 720 < th dose independent rect. 24 8
644 278.16 temperature 10.0 720 > th dose independent rect. 24 8
645 278.16 temperature 30.0 720 < th dose independent rect. 24 8
646 278.16 humidity 50.0 720 > th dose independent rect. 24 8
648 278.16 atmosphere 995.0 720 > th dose independent rect. 24 8
658 278.20 humidity 50.0 30 > th dose independent rect. 6 6
673 278.28 temperature 10.0 30 > th dose independent rect. 6 6
675 278.28 atmosphere 995.0 30 > th dose independent rect. 6 6
676 278.28 atmosphere 1015.0 30 < th dose independent rect. 6 6
677 278.28 precipitation 0.1 30 < th dose independent rect. 6 6
681 278.28 precipitation 0.1 30 < th dose dependent rect. 6 6
695 278.30 radiation 40.0 1440 < th dose dependent rect. 12 2
699 278.31 humidity 50.0 43200 > th dose independent rect. 7 1
710 278.34 radiation 10.0 30 < th dose independent rect. 3 8
713 278.35 humidity 90.0 10 < th dose dependent rect. 14 10
723 278.37 radiation 10.0 30 < th dose dependent rect. 4 13
726 278.38 radiation 1.0 10 > th dose independent rect. 6 6
732 278.39 radiation 40.0 720 < th dose independent rect. 24 8
746 278.41 radiation 30.0 1440 < th dose independent rect. 10 5
799 278.45 humidity 80.0 10 < th dose dependent sin 14 NA
826 278.50 temperature 30.0 90 < th dose dependent rect. 3 2
829 278.51 radiation 10.0 30 < th dose dependent sin 3 NA
868 278.57 wind 1.0 30 > th dose dependent rect. 12 12
891 278.61 atmosphere 1000.0 90 > th dose dependent rect. 12 11
912 278.65 precipitation 0.1 30 < th dose independent rect. 12 18
916 278.65 precipitation 0.1 30 < th dose dependent rect. 12 18
939 278.72 wind 9.0 720 < th dose independent rect. 20 16
973 278.81 temperature 10.0 30 > th dose dependent rect. 6 22
982 278.83 temperature 20.0 270 < th dose dependent rect. 24 5
997 278.88 wind 1.0 30 > th dose dependent rect. 22 8