BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0709200 Os02g0709200|AK058999
         (425 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0709200  Similar to Histidinol-phosphate aminotransfera...   792   0.0  

>Os02g0709200 Similar to Histidinol-phosphate aminotransferase, chloroplast
           precursor (EC 2.6.1.9) (Imidazole acetol-phosphate
           transaminase)
          Length = 425

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/425 (92%), Positives = 393/425 (92%)

Query: 1   MDFSVRARIQSPHRSAAHFVAGEGGRRRPATSRVSFRXXXXXXXXXXXXXXXXXXXXTKR 60
           MDFSVRARIQSPHRSAAHFVAGEGGRRRPATSRVSFR                    TKR
Sbjct: 1   MDFSVRARIQSPHRSAAHFVAGEGGRRRPATSRVSFRSMASAASVEEPAAAAAAAAETKR 60

Query: 61  GPSGASFIREHLRSLAPYQPILPFEVLSARLGRKPEDIIKLDANENPYGPPPEVAKALGN 120
           GPSGASFIREHLRSLAPYQPILPFEVLSARLGRKPEDIIKLDANENPYGPPPEVAKALGN
Sbjct: 61  GPSGASFIREHLRSLAPYQPILPFEVLSARLGRKPEDIIKLDANENPYGPPPEVAKALGN 120

Query: 121 LKFPYVYPDPESRQLRAALAEDSGLESEYILAGCGADELIDLIMRCVLEPGDKIVDCPPT 180
           LKFPYVYPDPESRQLRAALAEDSGLESEYILAGCGADELIDLIMRCVLEPGDKIVDCPPT
Sbjct: 121 LKFPYVYPDPESRQLRAALAEDSGLESEYILAGCGADELIDLIMRCVLEPGDKIVDCPPT 180

Query: 181 FTMYEFDASVNGALVIKVPRLPDFSLDVAQIVKVVEQEKPKSIFLTSPNNPDGSIINDED 240
           FTMYEFDASVNGALVIKVPRLPDFSLDVAQIVKVVEQEKPKSIFLTSPNNPDGSIINDED
Sbjct: 181 FTMYEFDASVNGALVIKVPRLPDFSLDVAQIVKVVEQEKPKSIFLTSPNNPDGSIINDED 240

Query: 241 LLKILDLPILVVLDEAYIEFSSLQTRMSWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPL 300
           LLKILDLPILVVLDEAYIEFSSLQTRMSWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPL
Sbjct: 241 LLKILDLPILVVLDEAYIEFSSLQTRMSWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPL 300

Query: 301 SIIEYLWRAKQPYNXXXXXXXXXXXXLQNPTYLEEVKNLLLQERDRLYDLLKEIPFLKPF 360
           SIIEYLWRAKQPYN            LQNPTYLEEVKNLLLQERDRLYDLLKEIPFLKPF
Sbjct: 301 SIIEYLWRAKQPYNVSVAAEVSACAALQNPTYLEEVKNLLLQERDRLYDLLKEIPFLKPF 360

Query: 361 PSHSNFILCEVTSGKDAKKIKEDLAKMGVMIRHYDKKELKGYIRISVGKPEHTDALMKGL 420
           PSHSNFILCEVTSGKDAKKIKEDLAKMGVMIRHYDKKELKGYIRISVGKPEHTDALMKGL
Sbjct: 361 PSHSNFILCEVTSGKDAKKIKEDLAKMGVMIRHYDKKELKGYIRISVGKPEHTDALMKGL 420

Query: 421 KALQL 425
           KALQL
Sbjct: 421 KALQL 425



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,125,773
Number of extensions: 576600
Number of successful extensions: 1304
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1306
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 321
Effective length of database: 11,605,545
Effective search space: 3725379945
Effective search space used: 3725379945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)