Os02g0709200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histidinol-phosphate aminotransferase, chloroplast precursor (EC 2.6.1.9) (Imidazole acetol-phosphate transaminase).
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Os02g0709200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histidinol-phosphate aminotransferase, chloroplast precursor (EC 2.6.1.9) (Imidazole acetol-phosphate transaminase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.53 | 0.268 | 13 | -0.366 | 0.956 | 0.561 | 0.329 | 0.637 | -0.172 | 15.6 | 20.5 | 391 | -- | -- |
| 33.81 | 0.271 | 13 | -0.251 | 0.954 | 0.492 | 0.167 | -- | -0.161 | 15.6 | 20.5 | 365 | -- | -- |
| 32.84 | 0.267 | 13 | -0.355 | 0.95 | 0.55 | -- | 0.594 | -0.171 | 15.7 | 20.6 | 414 | -- | -- |
| 33.9 | 0.271 | 13 | -0.245 | 0.953 | 0.499 | -- | -- | -0.147 | 15.6 | 20.54 | 365 | -- | -- |
| 75.63 | 0.405 | 13 | -0.495 | -- | 0.532 | -- | 0.813 | -0.174 | -- | 21.87 | 1096 | -- | -- |
| 41.96 | 0.304 | 13 | -0.407 | 0.892 | -- | 0.171 | -- | -0.253 | 15.5 | -- | -- | -- | -- |
| 42.05 | 0.304 | 13 | -0.404 | 0.893 | -- | -- | -- | -0.252 | 15.5 | -- | -- | -- | -- |
| 77.74 | 0.411 | 12.9 | -0.146 | -- | 0.573 | -- | -- | -0.0832 | -- | 21.3 | 2479 | -- | -- |
| 35.36 | 0.277 | 13 | -- | 0.953 | 0.535 | -- | -- | -0.105 | 15.6 | 20.5 | 409 | -- | -- |
| 86.68 | 0.435 | 13 | -0.442 | -- | -- | -- | -- | -0.276 | -- | -- | -- | -- | -- |
| 46.35 | 0.318 | 13 | -- | 0.901 | -- | -- | -- | -0.207 | 15.5 | -- | -- | -- | -- |
| 77.74 | 0.411 | 12.9 | -- | -- | 0.683 | -- | -- | -0.0999 | -- | 20.6 | 2495 | -- | -- |
| 91.83 | 0.447 | 13 | -- | -- | -- | -- | -- | -0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.17 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 8 |
| 8 | 30.80 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 19 |
| 10 | 30.84 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 17 |
| 16 | 31.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 8 |
| 20 | 31.33 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 16 |
| 22 | 31.45 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 18 |
| 29 | 31.67 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 20 |
| 47 | 31.92 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 18 |
| 49 | 31.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 56 | 32.04 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 16 |
| 65 | 32.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 66 | 32.13 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 2 |
| 71 | 32.17 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 17 |
| 81 | 32.25 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 13 |
| 111 | 32.42 | humidity | 70 | 30 | > th | dose dependent | sin | 8 | NA |
| 149 | 32.69 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 153 | 32.74 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 163 | 32.76 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 15 |
| 195 | 32.93 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 9 |
| 228 | 33.07 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 23 |
| 266 | 33.20 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 273 | 33.23 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 20 |
| 274 | 33.24 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 281 | 33.24 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 23 |
| 293 | 33.27 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 294 | 33.27 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 301 | 33.28 | humidity | 80 | 30 | > th | dose dependent | rect. | 24 | 14 |
| 340 | 33.33 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 23 |
| 342 | 33.33 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 365 | 33.38 | humidity | 70 | 270 | > th | dose dependent | rect. | 21 | 8 |
| 421 | 33.51 | humidity | 80 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 482 | 33.63 | humidity | 90 | 90 | < th | dose independent | rect. | 18 | 17 |
| 526 | 33.69 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 561 | 33.74 | humidity | 90 | 30 | < th | dose independent | sin | 7 | NA |
| 564 | 33.74 | humidity | 90 | 270 | < th | dose independent | rect. | 16 | 17 |
| 614 | 33.80 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 5 |
| 711 | 33.92 | humidity | 80 | 30 | > th | dose dependent | rect. | 21 | 19 |
| 719 | 33.94 | humidity | 90 | 30 | > th | dose independent | sin | 7 | NA |
| 765 | 34.00 | humidity | 80 | 30 | > th | dose dependent | rect. | 21 | 17 |
| 799 | 34.05 | humidity | 90 | 30 | > th | dose independent | rect. | 24 | 14 |
| 828 | 34.08 | temperature | 20 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 831 | 34.09 | temperature | 20 | 10 | > th | dose independent | sin | 11 | NA |
| 856 | 34.11 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 16 |
| 865 | 34.12 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 18 |
| 900 | 34.14 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 21 |
| 939 | 34.17 | humidity | 80 | 30 | > th | dose dependent | rect. | 21 | 15 |
| 963 | 34.19 | temperature | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 980 | 34.20 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 990 | 34.20 | humidity | 80 | 90 | > th | dose dependent | rect. | 24 | 23 |