BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0707500 Os02g0707500|AK107442
         (94 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0707500  Conserved hypothetical protein                      162   4e-41
Os01g0120000                                                       71   2e-13

>Os02g0707500 Conserved hypothetical protein
          Length = 94

 Score =  162 bits (411), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/94 (88%), Positives = 83/94 (88%)

Query: 1  FNGSRGGFEEVKEVETAXXXXXXXXXXXERRMRYGGGKLEVSFGYSFVDRPRACTCERVA 60
          FNGSRGGFEEVKEVETA           ERRMRYGGGKLEVSFGYSFVDRPRACTCERVA
Sbjct: 1  FNGSRGGFEEVKEVETALLLPPVLSLLVERRMRYGGGKLEVSFGYSFVDRPRACTCERVA 60

Query: 61 CAGWHELGAGAHECDSGLARGNTGRHRRWLGLAE 94
          CAGWHELGAGAHECDSGLARGNTGRHRRWLGLAE
Sbjct: 61 CAGWHELGAGAHECDSGLARGNTGRHRRWLGLAE 94



>Os01g0120000 
          Length = 193

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 42/66 (63%)

Query: 7   GFEEVKEVETAXXXXXXXXXXXERRMRYGGGKLEVSFGYSFVDRPRACTCERVACAGWHE 66
           GFEEVKEVE A           E R  YGG KLEVS G+SFV RPR   CERVACAG HE
Sbjct: 97  GFEEVKEVEIALLLPPVLSLLVEERRNYGGRKLEVSSGHSFVVRPRVRACERVACAGRHE 156

Query: 67  LGAGAH 72
           LG+  H
Sbjct: 157 LGSRRH 162



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.139    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,602,006
Number of extensions: 139269
Number of successful extensions: 215
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 2
Length of query: 94
Length of database: 17,035,801
Length adjustment: 63
Effective length of query: 31
Effective length of database: 13,746,319
Effective search space: 426135889
Effective search space used: 426135889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)