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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0707500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.67 (0.0321) R2 : 0.284
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.04 (0.0776) R2dC : 0.281 R2C : 0.279
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.114 (0.0676) R2dN8 : 0.00574 R2N8 : 0.0029
σ : 0.606
deviance : 167.88
__
_____
C
peak time of C : 1.58
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
142.24 0.56 4.56 0.961 0.684 -1.42 0.58 3.13 0.224 0.97 10.55 40 -- --
147.93 0.571 4.62 0.501 0.65 -1.39 -0.16 -- 0.106 1.19 10.55 40 -- --
143.31 0.558 4.57 0.886 0.664 -1.42 -- 2.61 0.218 0.985 8.811 40 -- --
148.02 0.567 4.62 0.514 0.663 -1.39 -- -- 0.108 0.987 11.61 32 -- --
161.86 0.593 4.54 1.03 -- -1.94 -- 2.31 0.332 -- 17.23 16 -- --
166.37 0.605 4.66 0.238 1.03 -- -0.034 -- -0.0874 1.58 -- -- -- --
166.38 0.604 4.66 0.239 1.03 -- -- -- -0.0872 1.58 -- -- -- --
166.05 0.6 4.58 0.674 -- -2.14 -- -- 0.224 -- 14.07 11 -- --
154.14 0.581 4.63 -- 0.725 -1.14 -- -- 0.0216 1.28 11.61 32 -- --
231.77 0.711 4.65 0.281 -- -- -- -- -0.0646 -- -- -- -- --
167.88 0.606 4.67 -- 1.04 -- -- -- -0.114 1.58 -- -- -- --
177.1 0.62 4.6 -- -- -1.93 -- -- 0.123 -- 14.38 6 -- --
233.85 0.714 4.65 -- -- -- -- -- -0.0957 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 130.02 temperature 15.0 270 > th dose dependent rect. 17 21
7 132.89 temperature 15.0 10 > th dose dependent rect. 6 23
13 133.88 temperature 15.0 10 > th dose dependent rect. 20 20
47 136.75 humidity 90.0 14400 > th dose dependent rect. 22 2
61 137.35 temperature 15.0 270 > th dose dependent rect. 5 9
82 138.04 temperature 15.0 10 > th dose dependent rect. 8 16
84 138.11 temperature 15.0 10 > th dose dependent rect. 19 23
85 138.13 temperature 15.0 10 > th dose dependent rect. 6 10
88 138.15 temperature 15.0 90 > th dose dependent rect. 6 18
94 138.22 temperature 25.0 270 > th dose independent rect. 17 21
95 138.22 temperature 25.0 90 > th dose independent rect. 19 21
107 138.48 radiation 10.0 4320 < th dose independent rect. 18 3
121 138.67 humidity 90.0 14400 > th dose dependent rect. 18 9
139 138.94 humidity 90.0 14400 > th dose dependent rect. 16 16
147 138.98 humidity 90.0 14400 > th dose dependent sin 13 NA
148 138.99 wind 1.0 43200 > th dose independent rect. 18 1
154 139.04 humidity 90.0 14400 > th dose dependent rect. 16 12
159 139.06 temperature 30.0 90 < th dose dependent rect. 3 16
160 139.09 wind 9.0 43200 > th dose dependent rect. 18 14
175 139.24 precipitation 0.1 43200 > th dose dependent rect. 5 2
189 139.30 precipitation 0.1 43200 > th dose independent rect. 5 2
190 139.30 precipitation 0.1 43200 < th dose independent rect. 5 2
191 139.30 precipitation 0.1 43200 < th dose dependent rect. 5 2
192 139.30 atmosphere 995.0 43200 < th dose dependent rect. 21 15
209 139.34 atmosphere 995.0 43200 < th dose independent rect. 1 13
222 139.38 atmosphere 995.0 43200 < th dose independent rect. 2 11
228 139.39 wind 1.0 43200 < th dose independent rect. 18 1
229 139.40 atmosphere 995.0 43200 > th dose independent rect. 9 4
230 139.40 precipitation 0.1 43200 < th dose independent rect. 5 4
231 139.40 precipitation 0.1 43200 < th dose dependent rect. 5 4
234 139.41 atmosphere 995.0 43200 < th dose dependent sin 7 NA
244 139.43 atmosphere 995.0 43200 > th dose independent rect. 3 9
252 139.46 atmosphere 995.0 43200 > th dose independent rect. 5 4
254 139.48 wind 9.0 43200 > th dose independent rect. 5 1
263 139.51 wind 9.0 43200 > th dose independent rect. 10 2
264 139.51 atmosphere 995.0 43200 < th dose independent rect. 3 9
268 139.51 temperature 30.0 270 < th dose dependent rect. 22 21
270 139.52 atmosphere 995.0 43200 > th dose independent rect. 4 7
290 139.58 wind 9.0 43200 < th dose independent rect. 10 2
291 139.58 wind 9.0 43200 > th dose dependent rect. 17 16
308 139.64 wind 9.0 43200 > th dose independent rect. 9 4
341 139.73 atmosphere 995.0 43200 < th dose independent rect. 4 6
348 139.75 radiation 30.0 4320 < th dose independent rect. 7 1
351 139.75 wind 9.0 43200 > th dose independent rect. 4 11
358 139.76 wind 7.0 43200 > th dose dependent rect. 9 4
360 139.77 wind 7.0 43200 > th dose dependent rect. 10 2
370 139.80 atmosphere 995.0 43200 < th dose dependent rect. 3 6
382 139.83 wind 9.0 43200 > th dose independent rect. 18 15
390 139.85 wind 9.0 43200 < th dose independent rect. 9 4
391 139.85 wind 9.0 43200 > th dose independent rect. 23 16
399 139.87 wind 9.0 43200 < th dose independent rect. 5 1
414 139.89 wind 9.0 43200 > th dose independent rect. 2 13
424 139.90 humidity 90.0 14400 > th dose dependent rect. 4 4
428 139.91 atmosphere 995.0 43200 < th dose independent rect. 5 4
429 139.91 wind 9.0 43200 < th dose independent rect. 4 10
434 139.91 wind 9.0 43200 > th dose dependent rect. 17 18
447 139.94 radiation 1.0 4320 < th dose dependent rect. 6 3
453 139.95 humidity 90.0 43200 > th dose dependent rect. 11 1
465 139.97 temperature 30.0 10 < th dose dependent rect. 4 15
475 140.00 atmosphere 995.0 43200 > th dose independent rect. 6 2
477 140.00 wind 9.0 43200 > th dose independent rect. 8 6
488 140.03 wind 9.0 43200 < th dose independent rect. 7 7
489 140.04 humidity 90.0 43200 > th dose dependent rect. 11 4
499 140.06 atmosphere 995.0 43200 < th dose dependent rect. 9 7
508 140.08 atmosphere 995.0 43200 < th dose independent rect. 7 8
521 140.09 wind 9.0 43200 > th dose independent sin 4 NA
542 140.12 wind 9.0 43200 < th dose independent rect. 23 16
544 140.12 temperature 10.0 90 > th dose dependent sin 5 NA
556 140.13 wind 7.0 43200 > th dose dependent rect. 4 9
573 140.14 wind 9.0 43200 < th dose independent rect. 24 14
582 140.16 humidity 90.0 43200 > th dose independent rect. 11 1
599 140.18 wind 9.0 43200 < th dose independent sin 4 NA
601 140.18 wind 9.0 43200 > th dose dependent sin 11 NA
619 140.20 wind 9.0 43200 > th dose dependent rect. 18 9
622 140.21 atmosphere 995.0 43200 > th dose independent rect. 1 13
628 140.22 wind 9.0 43200 < th dose independent rect. 23 2
643 140.24 wind 7.0 43200 > th dose dependent rect. 21 16
646 140.25 wind 9.0 43200 > th dose independent rect. 19 20
658 140.27 humidity 90.0 43200 > th dose independent rect. 6 1
663 140.27 wind 9.0 43200 > th dose dependent rect. 18 6
699 140.31 wind 9.0 43200 < th dose independent rect. 18 16
703 140.31 wind 7.0 43200 > th dose dependent rect. 24 13
714 140.32 wind 9.0 43200 > th dose dependent rect. 9 11
729 140.34 wind 9.0 43200 > th dose independent rect. 21 4
767 140.37 wind 7.0 43200 > th dose independent rect. 5 3
773 140.38 humidity 90.0 43200 > th dose independent rect. 10 5
784 140.39 wind 9.0 43200 < th dose independent rect. 18 20
788 140.39 wind 9.0 43200 > th dose dependent rect. 9 14
789 140.39 wind 9.0 43200 > th dose dependent rect. 9 16
793 140.39 wind 9.0 43200 > th dose dependent rect. 14 21
796 140.40 humidity 80.0 14400 > th dose dependent rect. 22 9
808 140.41 wind 9.0 43200 > th dose dependent rect. 17 22
829 140.44 humidity 90.0 14400 > th dose dependent rect. 5 2
851 140.46 wind 9.0 43200 > th dose dependent rect. 9 21
864 140.48 wind 9.0 43200 < th dose independent rect. 21 3
868 140.48 wind 9.0 43200 > th dose dependent sin 21 NA
882 140.49 radiation 20.0 4320 > th dose dependent rect. 16 16
894 140.51 wind 7.0 43200 > th dose dependent rect. 5 2
917 140.53 temperature 15.0 270 > th dose dependent sin 7 NA
920 140.53 wind 9.0 43200 > th dose dependent rect. 14 19
931 140.55 humidity 90.0 43200 < th dose independent rect. 11 1
950 140.57 wind 9.0 43200 > th dose dependent rect. 22 3
962 140.58 humidity 90.0 14400 > th dose independent rect. 21 3
983 140.60 atmosphere 995.0 43200 < th dose dependent rect. 5 3
994 140.61 temperature 20.0 4320 < th dose independent rect. 21 1