BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0702100 Os02g0702100|AK108297
         (109 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0702100  Conserved hypothetical protein                      119   4e-28
Os04g0602300  Conserved hypothetical protein                       70   4e-13

>Os02g0702100 Conserved hypothetical protein
          Length = 109

 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/75 (85%), Positives = 64/75 (85%)

Query: 1  MRAAGKPXXXXXXXXXXXNIRGLLQDFLEQQHRLDVRRQEALERHAQERAAIEQQWRQSM 60
          MRAAGKP           NIRGLLQDFLEQQHRLDVRRQEALERHAQERAAIEQQWRQSM
Sbjct: 1  MRAAGKPTSGGSGTSRSSNIRGLLQDFLEQQHRLDVRRQEALERHAQERAAIEQQWRQSM 60

Query: 61 QALERERLMLEQAWM 75
          QALERERLMLEQAWM
Sbjct: 61 QALERERLMLEQAWM 75



>Os04g0602300 Conserved hypothetical protein
          Length = 203

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 19  NIRGLLQDFLEQQHRLDVRRQEALERHAQERAAIEQQWRQSMQALERERLMLEQAWM 75
           +I  LLQDFL QQ R+D++  E +ER +QER   EQ+WRQSMQ LE+ERLMLE  WM
Sbjct: 114 SIHELLQDFLVQQQRMDIQWHEMMERRSQERIVFEQEWRQSMQKLEQERLMLEHTWM 170



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,867,336
Number of extensions: 50686
Number of successful extensions: 601
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 600
Number of HSP's successfully gapped: 2
Length of query: 109
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 32
Effective length of database: 13,015,323
Effective search space: 416490336
Effective search space used: 416490336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)