BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0701900 Os02g0701900|AK060640
         (327 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0701900  Glucose/ribitol dehydrogenase family protein        494   e-140

>Os02g0701900 Glucose/ribitol dehydrogenase family protein
          Length = 327

 Score =  494 bits (1273), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/293 (83%), Positives = 245/293 (83%)

Query: 35  KGRHVLITGGSSGIGLXXXXXXXXXXXRVSIXXXXXXXXXXXXXXIRAATGXXXXXXXXX 94
           KGRHVLITGGSSGIGL           RVSI              IRAATG         
Sbjct: 35  KGRHVLITGGSSGIGLAMATAAAREGARVSILARNAARLEEARGAIRAATGRDVGVHAAD 94

Query: 95  XXXXXXXXXXXXXXGPVDVLVCNHGVFVPQELEKQEMEEVKWMVDINLMGTFHLVKAALP 154
                         GPVDVLVCNHGVFVPQELEKQEMEEVKWMVDINLMGTFHLVKAALP
Sbjct: 95  VRDADAVARALAEAGPVDVLVCNHGVFVPQELEKQEMEEVKWMVDINLMGTFHLVKAALP 154

Query: 155 AMKERTKETRLPASIAIMSSQAGQVGVYGYTAYSASKFALRGLGEALQHEVIADNIHVSL 214
           AMKERTKETRLPASIAIMSSQAGQVGVYGYTAYSASKFALRGLGEALQHEVIADNIHVSL
Sbjct: 155 AMKERTKETRLPASIAIMSSQAGQVGVYGYTAYSASKFALRGLGEALQHEVIADNIHVSL 214

Query: 215 IFPPDTETPGFAEENKRRPELTNIIAGSSGGMKADDVARKALDGIKSGKFIVPCNFEGAM 274
           IFPPDTETPGFAEENKRRPELTNIIAGSSGGMKADDVARKALDGIKSGKFIVPCNFEGAM
Sbjct: 215 IFPPDTETPGFAEENKRRPELTNIIAGSSGGMKADDVARKALDGIKSGKFIVPCNFEGAM 274

Query: 275 LAVATAGLSPQSSPLTAFLEIIGAGVMRFAAICFQFNWFMTIENWYAKNKKHA 327
           LAVATAGLSPQSSPLTAFLEIIGAGVMRFAAICFQFNWFMTIENWYAKNKKHA
Sbjct: 275 LAVATAGLSPQSSPLTAFLEIIGAGVMRFAAICFQFNWFMTIENWYAKNKKHA 327



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,416,069
Number of extensions: 314367
Number of successful extensions: 877
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 226
Effective length of database: 11,762,187
Effective search space: 2658254262
Effective search space used: 2658254262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)