BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0694100 Os02g0694100|J090034G11
         (475 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0694100  Cyclin-like F-box domain containing protein         664   0.0  

>Os02g0694100 Cyclin-like F-box domain containing protein
          Length = 475

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/475 (73%), Positives = 347/475 (73%)

Query: 1   MRTKHLIPHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFEQFPEAVLGLIVSKLPFXXX 60
           MRTKHLIPHH                            PFEQFPEAVLGLIVSKLPF   
Sbjct: 1   MRTKHLIPHHAAGYTYARAYATTGGGGGDGGDGGGGGDPFEQFPEAVLGLIVSKLPFRSA 60

Query: 61  XXXXXXXXXXXGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                      GV                                               
Sbjct: 61  VAASAISRRWRGVAAAAPALDLDFAAAFPAAPRRRAAFAAAATAALSRPHHPLRRLRLGL 120

Query: 121 XXXFDQXXXXXXXXXXXXXXXXXXXRGVEQXXXXXXXXXXXXXXXXXIACTNLTSLTLRL 180
              FDQ                   RGVEQ                 IACTNLTSLTLRL
Sbjct: 121 DGLFDQAFAASAADHLASWLAAAAARGVEQLELHLPRSRLALLPPSLIACTNLTSLTLRL 180

Query: 181 DHYAHPLPSLCSLTRLSRLHLASIPLAGDDFFADLFSHCKQLRYLILEQCRIGALCLAGT 240
           DHYAHPLPSLCSLTRLSRLHLASIPLAGDDFFADLFSHCKQLRYLILEQCRIGALCLAGT
Sbjct: 181 DHYAHPLPSLCSLTRLSRLHLASIPLAGDDFFADLFSHCKQLRYLILEQCRIGALCLAGT 240

Query: 241 TQLCSLAITDCSWTPQSSVAFSDMPALRTLHYLGAMATRHIIDNVDSLEEVVLAIKKPQV 300
           TQLCSLAITDCSWTPQSSVAFSDMPALRTLHYLGAMATRHIIDNVDSLEEVVLAIKKPQV
Sbjct: 241 TQLCSLAITDCSWTPQSSVAFSDMPALRTLHYLGAMATRHIIDNVDSLEEVVLAIKKPQV 300

Query: 301 KLQEPNLRELLSLVGNVQSLMLSPWCIEQFARPEEWSKVRLNKVRQLSCIIERREEGASS 360
           KLQEPNLRELLSLVGNVQSLMLSPWCIEQFARPEEWSKVRLNKVRQLSCIIERREEGASS
Sbjct: 301 KLQEPNLRELLSLVGNVQSLMLSPWCIEQFARPEEWSKVRLNKVRQLSCIIERREEGASS 360

Query: 361 IAPLLANCQNVEELSVSVVPSQCKRRWGSDDGANHWVMGGKGVVLRHLRAVRMVYIDESK 420
           IAPLLANCQNVEELSVSVVPSQCKRRWGSDDGANHWVMGGKGVVLRHLRAVRMVYIDESK
Sbjct: 361 IAPLLANCQNVEELSVSVVPSQCKRRWGSDDGANHWVMGGKGVVLRHLRAVRMVYIDESK 420

Query: 421 SGLDLVKLLLKNTPMLEMMTIVPSMDGLEQAKFRRRVLKLRKASRDADIQFSATG 475
           SGLDLVKLLLKNTPMLEMMTIVPSMDGLEQAKFRRRVLKLRKASRDADIQFSATG
Sbjct: 421 SGLDLVKLLLKNTPMLEMMTIVPSMDGLEQAKFRRRVLKLRKASRDADIQFSATG 475



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,206,924
Number of extensions: 426263
Number of successful extensions: 1848
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1848
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 370
Effective length of database: 11,553,331
Effective search space: 4274732470
Effective search space used: 4274732470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 158 (65.5 bits)