BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0691500 Os02g0691500|AK060695
         (246 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0691500  Conserved hypothetical protein                      130   7e-31

>Os02g0691500 Conserved hypothetical protein
          Length = 246

 Score =  130 bits (328), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 81/155 (52%)

Query: 92  RHRGEPGRDARQRPCHVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPCALHPQRQGGG 151
           RHRGEPGRDARQRPCHVT                             LPCALHPQRQGGG
Sbjct: 92  RHRGEPGRDARQRPCHVTAAARAAAQDDRRPAGPPAHRAAPQRHHAGLPCALHPQRQGGG 151

Query: 152 RMQPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHVLSRSKC 211
           RMQPDD                                             VHVLSRSKC
Sbjct: 152 RMQPDDGGRHRGGGAPRALHRRRGGGRLGASPRGGATGHDGDGGGEERTRDVHVLSRSKC 211

Query: 212 LTCRRLCGRVYCMPRSRFSPLFRLVTFLLCSGPAG 246
           LTCRRLCGRVYCMPRSRFSPLFRLVTFLLCSGPAG
Sbjct: 212 LTCRRLCGRVYCMPRSRFSPLFRLVTFLLCSGPAG 246



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.143    0.487 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,222,794
Number of extensions: 70585
Number of successful extensions: 178
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 148
Effective length of database: 11,918,829
Effective search space: 1763986692
Effective search space used: 1763986692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)