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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0691500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.66 (0.0376) R2 : 0.673
β1 : -1.45 (0.142) R2dD : 0.0888 R2D : 0.171
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.15 (0.211) R2dE : 0.474 R2E : 0.585
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.212 (0.0827) R2dN8 : 0.00707 R2N8 : 0.0199
σ : 0.698
deviance : 224.66
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.45
memory length : 56
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.65
open length of G : 17.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.98 0.653 3.65 -1.31 0.511 3.98 -1.08 -3.4 -0.191 20.8 23.9 62 7.23 18.3
202.62 0.663 3.69 -1.54 0.474 4.91 -1.95 -- -0.264 20.8 23.32 86 7.23 18
196.32 0.653 3.64 -1.21 0.511 3.86 -- -4.03 -0.16 20.9 23.93 62 7.25 18.2
213.74 0.681 3.7 -1.48 0.496 5.02 -- -- -0.268 20.2 23.2 117 6.92 18
209.74 0.675 3.61 -1.17 -- 4.1 -- -3.82 -0.132 -- 24.12 53 7.48 18.1
438.49 0.982 3.83 -2.54 0.958 -- -1.87 -- -0.783 21.5 -- -- -- --
451.39 0.995 3.83 -2.47 0.964 -- -- -- -0.781 21.7 -- -- -- --
224.66 0.698 3.66 -1.45 -- 5.15 -- -- -0.212 -- 23.45 56 7.65 17.8
267.54 0.762 3.68 -- 0.532 5.71 -- -- -0.0952 20.7 23.13 164 6.55 18.1
506.54 1.05 3.8 -2.47 -- -- -- -- -0.783 -- -- -- -- --
612.68 1.16 3.76 -- 0.96 -- -- -- -0.506 21.5 -- -- -- --
279.64 0.779 3.63 -- -- 5.84 -- -- -0.0328 -- 23.36 100 7.27 17.9
666.87 1.21 3.74 -- -- -- -- -- -0.509 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 198.85 temperature 25 90 < th dose dependent rect. 7 18
3 204.46 temperature 25 10 < th dose dependent rect. 6 20
52 215.02 temperature 25 90 < th dose dependent sin 18 NA
62 218.45 temperature 20 1440 < th dose dependent rect. 21 9
69 219.29 temperature 25 10 < th dose dependent rect. 4 23
72 219.54 temperature 20 1440 < th dose dependent sin 9 NA
80 220.08 temperature 25 90 < th dose dependent rect. 11 14
83 220.14 temperature 20 1440 < th dose dependent rect. 20 15
160 222.70 temperature 20 1440 < th dose dependent rect. 3 2
166 223.04 temperature 20 1440 < th dose dependent rect. 1 5
186 223.88 temperature 20 1440 < th dose dependent rect. 22 4
225 224.99 temperature 20 270 < th dose independent rect. 5 19
267 226.28 temperature 20 1440 < th dose dependent rect. 9 21
273 226.43 temperature 25 1440 < th dose dependent rect. 8 3
350 228.18 temperature 20 1440 < th dose dependent no NA NA
354 228.29 temperature 20 90 < th dose independent rect. 8 17
395 229.77 temperature 20 1440 < th dose dependent rect. 1 1
403 229.98 temperature 25 1440 < th dose dependent rect. 5 7
451 232.53 temperature 25 90 < th dose dependent rect. 15 23
457 232.90 temperature 25 90 < th dose dependent rect. 13 23
476 233.61 temperature 25 90 < th dose dependent no NA NA
515 234.97 temperature 25 30 < th dose dependent rect. 23 23
516 234.98 temperature 25 30 < th dose dependent rect. 9 23
526 235.25 temperature 25 30 < th dose dependent rect. 11 23
533 235.40 temperature 25 30 < th dose dependent rect. 19 23
534 235.45 temperature 25 30 < th dose dependent rect. 21 23
540 235.65 temperature 20 10 < th dose independent rect. 9 17
567 236.43 temperature 20 10 < th dose independent rect. 6 20
909 242.90 temperature 20 4320 > th dose independent rect. 19 2