BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0666700 Os02g0666700|AK106879
         (538 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0666700  Permease for cytosine/purines, uracil, thiamin...   895   0.0  
Os07g0217200                                                       80   3e-15

>Os02g0666700 Permease for cytosine/purines, uracil, thiamine, allantoin family
           protein
          Length = 538

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/519 (88%), Positives = 457/519 (88%)

Query: 20  GHRIEVKSHHAXXXXXXXXXXXXXXXXASRPRMLPARPRMSSSESDLSPTPPSERTMTAW 79
           GHRIEVKSHHA                ASRPRMLPARPRMSSSESDLSPTPPSERTMTAW
Sbjct: 20  GHRIEVKSHHASPPRLPLLPRSPGLTLASRPRMLPARPRMSSSESDLSPTPPSERTMTAW 79

Query: 80  DLASLWVGLVVGVPSYYLAGSLVDLGMSALQGVATXXXXXXXXXXXXXXXXXXXXTHGLP 139
           DLASLWVGLVVGVPSYYLAGSLVDLGMSALQGVAT                    THGLP
Sbjct: 80  DLASLWVGLVVGVPSYYLAGSLVDLGMSALQGVATVAFANLVVLVSLVLTAAPAVTHGLP 139

Query: 140 FPVLARAAFGVRGAHLPAVIRALVGCGWFGIESWIGGRAVFLLLPSRLKSYQPLLAPVPG 199
           FPVLARAAFGVRGAHLPAVIRALVGCGWFGIESWIGGRAVFLLLPSRLKSYQPLLAPVPG
Sbjct: 140 FPVLARAAFGVRGAHLPAVIRALVGCGWFGIESWIGGRAVFLLLPSRLKSYQPLLAPVPG 199

Query: 200 LGAAPLEFACFLAFWAAQLGVIMHGMEGIRKLEKYSAPVLIVLTSALLAWAYVSAGGFGR 259
           LGAAPLEFACFLAFWAAQLGVIMHGMEGIRKLEKYSAPVLIVLTSALLAWAYVSAGGFGR
Sbjct: 200 LGAAPLEFACFLAFWAAQLGVIMHGMEGIRKLEKYSAPVLIVLTSALLAWAYVSAGGFGR 259

Query: 260 ILSLPPRLTRAEFWKVFFPSLTANISFWATVAINIPDFARYARSQADQVLGQAGLPVFMG 319
           ILSLPPRLTRAEFWKVFFPSLTANISFWATVAINIPDFARYARSQADQVLGQAGLPVFMG
Sbjct: 260 ILSLPPRLTRAEFWKVFFPSLTANISFWATVAINIPDFARYARSQADQVLGQAGLPVFMG 319

Query: 320 MFTFAGLAVTSATEAIFGHVISDPIELLGRIGGPVTTVLAIVGISLATITTXXXXXXXXX 379
           MFTFAGLAVTSATEAIFGHVISDPIELLGRIGGPVTTVLAIVGISLATITT         
Sbjct: 320 MFTFAGLAVTSATEAIFGHVISDPIELLGRIGGPVTTVLAIVGISLATITTNIAANVVAP 379

Query: 380 XXXXXSMSPRKFTFAKGALVTALLGIAFQPWRLLSSSESFVYTWLLGYSALMGPIGGIIL 439
                SMSPRKFTFAKGALVTALLGIAFQPWRLLSSSESFVYTWLLGYSALMGPIGGIIL
Sbjct: 380 ANALVSMSPRKFTFAKGALVTALLGIAFQPWRLLSSSESFVYTWLLGYSALMGPIGGIIL 439

Query: 440 ADHYIVRRTALDVDALYSEDSHGPYYFQGGFNXXXXXXXXXXXXPIVPGFLHNVGVLPSV 499
           ADHYIVRRTALDVDALYSEDSHGPYYFQGGFN            PIVPGFLHNVGVLPSV
Sbjct: 440 ADHYIVRRTALDVDALYSEDSHGPYYFQGGFNVAAMAAMAAGVAPIVPGFLHNVGVLPSV 499

Query: 500 SKAFETAYNNAWFVSFFVAGAVYCLLCRRNRNELKHQHD 538
           SKAFETAYNNAWFVSFFVAGAVYCLLCRRNRNELKHQHD
Sbjct: 500 SKAFETAYNNAWFVSFFVAGAVYCLLCRRNRNELKHQHD 538



>Os07g0217200 
          Length = 158

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/39 (97%), Positives = 38/39 (97%)

Query: 385 SMSPRKFTFAKGALVTALLGIAFQPWRLLSSSESFVYTW 423
           SMSPRKFTFAKGALVTALLGIAFQPWRLLSS ESFVYTW
Sbjct: 10  SMSPRKFTFAKGALVTALLGIAFQPWRLLSSCESFVYTW 48



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,989,972
Number of extensions: 620938
Number of successful extensions: 1835
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1833
Number of HSP's successfully gapped: 2
Length of query: 538
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 432
Effective length of database: 11,501,117
Effective search space: 4968482544
Effective search space used: 4968482544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)