FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0666700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Permease for cytosine/purines, uracil, thiamine, allantoin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.92 (0.046) R2 : 0.495
β1 : 1.44 (0.168) R2dD : 0.0849 R2D : 0.0918
β2 : 1.69 (0.12) R2dC : 0.226 R2C : 0.251
β3 : 1.38 (0.22) R2dE : 0.0483 R2E : 0.103
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.34 (0.691) R2dD*E : 0.0473 R2D*E : 0.061
γ1 : -0.337 (0.0983) R2dN8 : 0.0182 R2N8 : 0.0328
σ : 0.857
deviance : 338.94
__
_____
C
peak time of C : 19.3
E
wheather : humidity
threshold : 74.41
memory length : 4766
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
330.19 0.854 3.93 1.48 1.69 1.4 1.82 4.15 -0.343 19.3 74.34 4739 -- --
356.03 0.879 3.92 1.46 1.69 1.7 2.13 -- -0.255 19.3 72.3 4741 -- --
338.94 0.857 3.92 1.44 1.69 1.38 -- 4.34 -0.337 19.3 74.41 4766 -- --
367.62 0.893 3.91 1.41 1.69 1.7 -- -- -0.214 19.4 71.43 4726 -- --
361.52 0.886 3.84 1.38 -- 2.48 -- 4.09 -0.271 -- 79.46 586 -- --
405.86 0.944 3.95 1.51 1.79 -- 2.15 -- -0.4 19.2 -- -- -- --
418.2 0.958 3.95 1.47 1.8 -- -- -- -0.396 19.3 -- -- -- --
367.77 0.893 3.89 1.18 -- 2.83 -- -- -0.293 -- 77.41 580 -- --
387.23 0.917 3.93 -- 1.66 2.24 -- -- -0.116 19 56 4028 -- --
589.33 1.13 3.91 1.44 -- -- -- -- -0.426 -- -- -- -- --
475.08 1.02 3.99 -- 1.78 -- -- -- -0.559 19.3 -- -- -- --
402.08 0.934 3.9 -- -- 2.96 -- -- -0.405 -- 76.58 589 -- --
643.82 1.18 3.94 -- -- -- -- -- -0.586 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 327.05 temperature 30 270 < th dose independent rect. 9 14
2 327.60 humidity 80 270 < th dose dependent sin 17 NA
4 328.06 humidity 60 720 > th dose independent rect. 11 10
5 328.14 humidity 60 720 > th dose independent rect. 11 8
6 328.53 humidity 70 270 < th dose independent sin 17 NA
8 328.59 humidity 60 720 > th dose independent rect. 11 18
10 328.83 temperature 30 270 < th dose independent sin 18 NA
18 329.49 temperature 30 270 > th dose independent sin 18 NA
21 329.70 humidity 60 720 < th dose independent rect. 11 7
43 330.28 humidity 80 270 < th dose dependent rect. 13 14
50 330.39 temperature 30 270 > th dose independent rect. 10 9
64 330.40 temperature 30 270 < th dose independent rect. 14 23
105 330.95 temperature 30 270 < th dose independent rect. 5 23
115 331.41 temperature 30 270 > th dose independent rect. 13 22
122 331.57 temperature 30 270 < th dose independent rect. 17 23
131 331.79 humidity 70 270 < th dose independent rect. 13 7
147 331.92 humidity 70 270 > th dose independent sin 17 NA
163 331.96 humidity 60 720 > th dose independent rect. 1 20
166 332.06 humidity 70 4320 < th dose dependent rect. 15 3
223 332.68 humidity 60 720 > th dose independent rect. 7 14
240 332.83 humidity 70 4320 < th dose dependent sin 15 NA
244 332.86 humidity 70 4320 < th dose dependent rect. 13 6
251 332.94 humidity 60 720 > th dose independent rect. 1 18
284 333.07 humidity 60 720 > th dose independent rect. 9 23
300 333.12 humidity 60 720 > th dose independent rect. 7 22
302 333.14 humidity 60 720 > th dose independent rect. 24 23
336 333.36 humidity 60 720 > th dose independent sin 21 NA
364 333.52 humidity 60 720 < th dose independent sin 20 NA
365 333.52 humidity 60 4320 > th dose independent rect. 10 4
428 333.84 humidity 60 4320 < th dose independent rect. 11 3
432 333.88 humidity 70 90 > th dose independent sin 14 NA
451 334.04 temperature 30 270 < th dose independent no NA NA
486 334.56 temperature 30 270 > th dose dependent rect. 15 22
522 334.90 temperature 30 270 > th dose independent no NA NA
686 335.18 humidity 70 4320 < th dose dependent rect. 12 2
691 335.22 temperature 25 270 > th dose dependent sin 20 NA
698 335.26 temperature 25 270 > th dose dependent rect. 12 23
723 335.43 temperature 30 720 > th dose independent rect. 18 22
739 335.72 humidity 90 14400 > th dose independent rect. 21 2
742 335.75 humidity 60 720 > th dose independent rect. 15 23
763 335.82 humidity 90 14400 > th dose dependent rect. 6 17
780 335.88 humidity 60 720 > th dose independent rect. 11 2
785 335.92 humidity 60 4320 > th dose independent rect. 17 21
790 335.97 humidity 60 720 > th dose independent no NA NA
801 336.03 humidity 70 4320 < th dose dependent rect. 15 23
838 336.24 humidity 50 270 > th dose dependent sin 18 NA
839 336.24 humidity 70 4320 < th dose dependent rect. 6 13
853 336.25 humidity 70 4320 < th dose dependent no NA NA
961 336.49 humidity 60 720 < th dose independent no NA NA