BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0662200 Os02g0662200|AK063236
         (230 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0662200  YbaK/prolyl-tRNA synthetase associated region ...   444   e-125

>Os02g0662200 YbaK/prolyl-tRNA synthetase associated region domain containing
           protein
          Length = 230

 Score =  444 bits (1143), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/230 (94%), Positives = 218/230 (94%)

Query: 1   MDAAAADLEARQLRILRRVADLELAAQQHRLGALSISAAPSGGEAETGATEARLSSILTA 60
           MDAAAADLEARQLRILRRVADLELAAQQHRLGALSISAAPSGGEAETGATEARLSSILTA
Sbjct: 1   MDAAAADLEARQLRILRRVADLELAAQQHRLGALSISAAPSGGEAETGATEARLSSILTA 60

Query: 61  RGVLDFTFRRVPADYYXXXXXXXXXXXXADSVNQLCKSIVMVNTQAAADVVDCSNPKNSK 120
           RGVLDFTFRRVPADYY            ADSVNQLCKSIVMVNTQAAADVVDCSNPKNSK
Sbjct: 61  RGVLDFTFRRVPADYYDRPLEERRDLLRADSVNQLCKSIVMVNTQAAADVVDCSNPKNSK 120

Query: 121 YYVVVVQYMARLNADSIKNFIYSLNEKQIPKKRFNMRLAPEEESLKLTGFVHNAVTCIGM 180
           YYVVVVQYMARLNADSIKNFIYSLNEKQIPKKRFNMRLAPEEESLKLTGFVHNAVTCIGM
Sbjct: 121 YYVVVVQYMARLNADSIKNFIYSLNEKQIPKKRFNMRLAPEEESLKLTGFVHNAVTCIGM 180

Query: 181 ETDIPVIIDEAITKLDKDFFWLGGGEVDLKLGVRTSQFLNAFKPFVVKCS 230
           ETDIPVIIDEAITKLDKDFFWLGGGEVDLKLGVRTSQFLNAFKPFVVKCS
Sbjct: 181 ETDIPVIIDEAITKLDKDFFWLGGGEVDLKLGVRTSQFLNAFKPFVVKCS 230



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,674,330
Number of extensions: 239531
Number of successful extensions: 615
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 133
Effective length of database: 11,971,043
Effective search space: 1592148719
Effective search space used: 1592148719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)