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Os02g0662200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : YbaK/prolyl-tRNA synthetase associated region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.96 (0.0165) R2 : 0.0115
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.08 (0.0348) R2dN8 : 0.0148 R2N8 : 0.0115
σ : 0.311
deviance : 44.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.46 0.185 10 -0.786 0.293 0.351 -0.185 0.767 -0.198 10.4 5.303 4621 -- --
15.85 0.185 9.98 -0.783 0.298 0.269 -0.117 -- -0.184 10.4 4.985 4620 -- --
15.6 0.184 9.99 -0.792 0.297 0.351 -- 0.756 -0.197 10.2 5.332 4620 -- --
15.93 0.186 9.97 -0.807 0.299 0.242 -- -- -0.175 10.4 5.4 4620 -- --
20.58 0.211 10 -0.797 -- 0.463 -- 1.11 -0.211 -- 5.626 4483 -- --
16.81 0.192 9.97 -0.89 0.307 -- -0.193 -- -0.178 10.7 -- -- -- --
16.96 0.193 9.97 -0.898 0.309 -- -- -- -0.179 10.6 -- -- -- --
21.18 0.214 9.98 -0.81 -- 0.288 -- -- -0.18 -- 5.353 4516 -- --
22.06 0.219 9.94 -- 0.335 0.802 -- -- 0.00454 10.3 5.394 34050 -- --
22.83 0.223 9.98 -0.904 -- -- -- -- -0.18 -- -- -- -- --
38.22 0.289 9.95 -- 0.315 -- -- -- -0.0788 10.8 -- -- -- --
27.91 0.246 9.94 -- -- 0.789 -- -- 0.0135 -- 5.356 33228 -- --
44.38 0.311 9.96 -- -- -- -- -- -0.08 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.54 wind 1.0 14400 < th dose dependent rect. 19 2
2 14.91 wind 1.0 14400 < th dose independent rect. 20 1
3 14.91 wind 1.0 14400 > th dose independent rect. 20 2
10 15.01 radiation 1.0 90 > th dose dependent rect. 7 5
11 15.02 temperature 20.0 270 > th dose independent rect. 7 20
13 15.03 wind 1.0 270 > th dose independent rect. 1 6
14 15.03 temperature 10.0 90 > th dose dependent rect. 22 14
15 15.04 radiation 20.0 90 < th dose independent sin 6 NA
20 15.06 wind 1.0 270 > th dose independent rect. 3 3
37 15.08 temperature 20.0 10 > th dose dependent rect. 23 15
46 15.12 radiation 1.0 90 > th dose independent rect. 12 19
48 15.12 precipitation 0.1 14400 > th dose dependent rect. 16 2
49 15.12 radiation 1.0 43200 < th dose dependent rect. 23 5
51 15.13 radiation 10.0 90 > th dose independent rect. 7 5
67 15.14 radiation 1.0 43200 < th dose dependent rect. 23 3
75 15.16 radiation 1.0 43200 < th dose dependent rect. 19 9
95 15.17 radiation 40.0 270 < th dose dependent sin 9 NA
107 15.20 radiation 1.0 30 > th dose independent rect. 12 21
115 15.21 radiation 1.0 43200 < th dose dependent rect. 1 1
116 15.21 wind 1.0 270 > th dose dependent rect. 3 3
118 15.21 wind 1.0 270 > th dose dependent rect. 2 5
120 15.22 radiation 10.0 90 > th dose dependent sin 7 NA
145 15.23 wind 7.0 14400 > th dose independent rect. 20 10
146 15.23 wind 7.0 14400 < th dose independent rect. 20 10
150 15.23 wind 7.0 14400 > th dose dependent rect. 20 10
151 15.23 temperature 10.0 90 > th dose dependent rect. 12 10
161 15.24 wind 5.0 14400 > th dose dependent sin 11 NA
162 15.24 radiation 1.0 10 > th dose dependent rect. 7 5
169 15.25 humidity 90.0 30 < th dose independent rect. 2 5
170 15.25 radiation 20.0 90 < th dose independent rect. 1 10
179 15.25 radiation 1.0 30 < th dose dependent sin 13 NA
180 15.25 radiation 40.0 90 < th dose dependent sin 5 NA
182 15.25 radiation 1.0 43200 < th dose dependent rect. 19 7
194 15.26 wind 1.0 43200 > th dose independent rect. 2 3
216 15.27 wind 1.0 270 > th dose independent rect. 4 1
221 15.27 radiation 20.0 90 < th dose independent rect. 5 12
223 15.27 humidity 50.0 720 > th dose independent rect. 19 20
226 15.27 temperature 10.0 270 > th dose dependent rect. 7 4
229 15.27 temperature 20.0 30 > th dose dependent rect. 7 7
235 15.28 radiation 30.0 43200 < th dose independent rect. 10 1
237 15.28 humidity 70.0 10 > th dose independent rect. 1 9
269 15.29 wind 7.0 14400 > th dose independent sin 11 NA
270 15.29 wind 7.0 14400 < th dose independent sin 11 NA
317 15.30 radiation 10.0 43200 < th dose independent rect. 12 1
319 15.30 wind 7.0 270 < th dose independent rect. 7 4
332 15.30 wind 5.0 4320 > th dose dependent rect. 17 3
336 15.30 temperature 30.0 90 < th dose dependent rect. 1 8
345 15.31 radiation 20.0 270 < th dose independent sin 10 NA
348 15.31 temperature 10.0 270 > th dose independent rect. 7 4
349 15.31 atmosphere 995.0 270 > th dose independent rect. 7 4
350 15.31 atmosphere 1015.0 270 < th dose independent rect. 7 4
352 15.31 precipitation 0.1 270 < th dose independent rect. 7 4
386 15.31 temperature 10.0 270 > th dose independent rect. 11 20
395 15.31 precipitation 0.1 270 < th dose dependent rect. 7 4
415 15.32 atmosphere 1000.0 14400 > th dose independent rect. 16 1
416 15.32 radiation 30.0 43200 > th dose independent rect. 10 1
418 15.32 humidity 50.0 270 > th dose independent rect. 7 4
441 15.32 humidity 90.0 30 < th dose dependent rect. 7 7
442 15.32 temperature 20.0 10 > th dose dependent rect. 2 12
449 15.32 wind 5.0 4320 > th dose dependent rect. 16 19
450 15.33 radiation 20.0 90 > th dose independent sin 7 NA
452 15.33 radiation 20.0 10 < th dose independent sin 5 NA
453 15.33 temperature 20.0 14400 < th dose independent rect. 21 1
454 15.33 atmosphere 1000.0 14400 < th dose independent rect. 16 1
464 15.33 wind 7.0 14400 > th dose independent rect. 17 16
471 15.33 temperature 30.0 270 < th dose dependent rect. 1 6
492 15.34 temperature 20.0 14400 > th dose independent rect. 21 1
495 15.34 wind 1.0 43200 < th dose independent rect. 2 3
511 15.34 radiation 20.0 90 < th dose independent rect. 3 14
518 15.34 wind 7.0 4320 > th dose independent rect. 16 19
520 15.34 wind 9.0 270 < th dose independent rect. 11 20
521 15.34 radiation 20.0 90 < th dose independent rect. 19 23
542 15.35 radiation 1.0 30 < th dose independent sin 13 NA
543 15.35 wind 7.0 4320 > th dose independent rect. 17 1
544 15.35 wind 7.0 4320 < th dose independent rect. 17 1
546 15.35 precipitation 0.1 4320 > th dose independent rect. 17 2
553 15.35 wind 1.0 270 > th dose independent rect. 7 18
557 15.35 radiation 40.0 270 < th dose independent rect. 10 21
560 15.35 radiation 20.0 90 < th dose dependent rect. 5 5
567 15.35 precipitation 0.1 4320 > th dose dependent rect. 5 13
593 15.36 radiation 20.0 90 < th dose independent rect. 1 16
597 15.36 wind 7.0 4320 < th dose independent rect. 16 19
603 15.36 temperature 10.0 90 > th dose dependent rect. 9 3
606 15.36 temperature 15.0 10 > th dose dependent rect. 9 5
619 15.36 radiation 30.0 90 < th dose dependent rect. 5 12
638 15.37 atmosphere 1000.0 14400 > th dose independent rect. 8 1
640 15.37 atmosphere 1000.0 14400 < th dose independent rect. 3 1
641 15.37 atmosphere 1000.0 14400 < th dose independent rect. 8 1
647 15.37 precipitation 0.1 4320 < th dose independent rect. 17 2
664 15.37 humidity 70.0 720 > th dose independent rect. 19 12
665 15.37 radiation 20.0 10 < th dose independent rect. 5 13
667 15.37 humidity 50.0 270 > th dose independent rect. 12 19
675 15.37 precipitation 0.1 4320 < th dose dependent rect. 17 2
694 15.38 atmosphere 1000.0 14400 > th dose independent rect. 3 1
701 15.38 wind 1.0 270 > th dose independent rect. 7 4
718 15.38 radiation 30.0 43200 < th dose independent rect. 16 20
720 15.38 radiation 40.0 30 < th dose independent rect. 12 21
721 15.38 radiation 20.0 10 > th dose independent rect. 16 22
722 15.38 wind 1.0 14400 < th dose dependent rect. 12 1
726 15.38 radiation 1.0 10 > th dose dependent rect. 5 7
761 15.39 wind 5.0 14400 < th dose independent rect. 21 1
767 15.39 humidity 80.0 10 < th dose independent rect. 9 3
783 15.39 radiation 30.0 43200 < th dose independent rect. 7 5
792 15.39 radiation 10.0 270 < th dose independent rect. 1 7
831 15.39 radiation 20.0 43200 > th dose dependent rect. 10 1
832 15.39 wind 1.0 90 > th dose dependent rect. 5 2
835 15.39 radiation 10.0 270 < th dose dependent rect. 3 4
840 15.39 precipitation 0.1 4320 > th dose dependent rect. 14 5
859 15.40 atmosphere 1000.0 14400 > th dose independent rect. 18 1
870 15.40 radiation 10.0 270 < th dose independent rect. 3 4
871 15.40 wind 7.0 4320 > th dose independent rect. 16 5
873 15.40 wind 7.0 4320 < th dose independent rect. 16 5
881 15.40 wind 3.0 90 > th dose independent rect. 12 6
907 15.40 radiation 20.0 90 < th dose independent rect. 3 8
939 15.40 precipitation 0.1 270 < th dose independent rect. 11 20
969 15.40 precipitation 0.1 270 < th dose dependent rect. 11 20
971 15.41 wind 5.0 14400 > th dose independent rect. 21 1