BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0658000 Os02g0658000|Os02g0658000
         (103 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0658000                                                       99   1e-21
Os10g0506400                                                       62   8e-11

>Os02g0658000 
          Length = 103

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 62/103 (60%)

Query: 1   MAASDGLPRAWETVASXXXXXXXXXXXXSAWRREAQPMXXXXXXXXXXXXVEMEAGLAQA 60
           MAASDGLPRAWETVAS            SAWRREAQPM            VEMEAGLAQA
Sbjct: 1   MAASDGLPRAWETVASGRRGIVGWRGRRSAWRREAQPMAAEAGSAREARAVEMEAGLAQA 60

Query: 61  AEMEAGLAREAQPMEGXXXXXXXXXXXXXXXXXEARPAVEEAT 103
           AEMEAGLAREAQPMEG                 EARPAVEEAT
Sbjct: 61  AEMEAGLAREAQPMEGGRIGARRIRWRRPAWCREARPAVEEAT 103



>Os10g0506400 
          Length = 325

 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 46/79 (58%), Gaps = 16/79 (20%)

Query: 1   MAASDGLPRAWETVASXXXXXXXXXXXXSAWRREAQPMXXXXXXXXXXXXVEMEAGL--- 57
           MAASDGLPRAWET A+             AWRREAQPM               EAG    
Sbjct: 176 MAASDGLPRAWETAATGRRGIVWWRGRRPAWRREAQPMAA-------------EAGSARE 222

Query: 58  AQAAEMEAGLAREAQPMEG 76
           A+AAEMEAGLAREA+PMEG
Sbjct: 223 ARAAEMEAGLAREARPMEG 241



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.117    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,940,554
Number of extensions: 31823
Number of successful extensions: 69
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 3
Length of query: 103
Length of database: 17,035,801
Length adjustment: 71
Effective length of query: 32
Effective length of database: 13,328,607
Effective search space: 426515424
Effective search space used: 426515424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 149 (62.0 bits)