FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0658000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0089) R2 : 0.00513
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0287 (0.0187) R2dN8 : 0.00663 R2N8 : 0.00513
σ : 0.168
deviance : 12.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
12.44 0.166 2.79 -0.112 0.0508 -0.0749 -0.198 0.28 0.0164 22.8 3.501 717 -- --
12.49 0.165 2.79 -0.124 0.0207 -0.0873 -0.0722 -- 0.0174 22 5.402 215 -- --
12.5 0.165 2.79 -0.113 0.0119 -0.0531 -- 0.191 0.0139 22.5 5.699 234 -- --
12.49 0.165 2.79 -0.114 0.0227 -0.104 -- -- 0.0163 19.9 5.7 206 -- --
12.51 0.165 2.79 -0.111 -- -0.0687 -- 0.158 0.0151 -- 5.637 234 -- --
12.62 0.167 2.79 -0.0954 0.0174 -- -0.106 -- 0.0176 1.76 -- -- -- --
12.66 0.167 2.79 -0.092 0.0174 -- -- -- 0.0183 1.17 -- -- -- --
12.52 0.165 2.79 -0.112 -- -0.0935 -- -- 0.0162 -- 5.6 206 -- --
12.82 0.168 2.79 -- 0.0107 -0.0491 -- -- 0.0306 21.1 6 206 -- --
12.68 0.166 2.79 -0.0914 -- -- -- -- 0.0186 -- -- -- -- --
12.88 0.168 2.79 -- 0.0159 -- -- -- 0.0285 0.944 -- -- -- --
12.82 0.167 2.79 -- -- -0.0487 -- -- 0.0305 -- 6 206 -- --
12.9 0.168 2.79 -- -- -- -- -- 0.0287 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 10.78 temperature 25.0 10 > th dose independent rect. 20 1
2 10.83 humidity 90.0 30 < th dose dependent rect. 20 1
4 10.87 temperature 20.0 30 > th dose dependent rect. 20 1
6 10.87 atmosphere 1015.0 30 < th dose dependent rect. 20 1
8 10.89 humidity 90.0 30 < th dose independent rect. 20 1
9 10.89 wind 9.0 30 < th dose independent rect. 21 23
11 10.90 wind 7.0 30 < th dose independent rect. 20 1
13 10.91 wind 1.0 30 > th dose independent rect. 20 1
16 10.91 temperature 10.0 30 > th dose independent rect. 20 1
19 10.91 temperature 30.0 30 < th dose independent rect. 20 1
20 10.91 humidity 50.0 30 > th dose independent rect. 20 1
23 10.91 atmosphere 995.0 30 > th dose independent rect. 20 1
25 10.91 atmosphere 1010.0 30 < th dose independent rect. 20 1
27 10.91 radiation 1.0 30 < th dose independent rect. 20 1
32 10.91 precipitation 0.1 30 < th dose independent rect. 20 1
33 10.91 temperature 10.0 30 > th dose independent rect. 21 23
34 10.91 wind 7.0 30 < th dose dependent rect. 20 1
36 10.91 radiation 1.0 30 < th dose dependent rect. 20 1
41 10.91 precipitation 0.1 30 < th dose dependent rect. 20 1
42 10.92 temperature 10.0 1440 > th dose independent rect. 21 1
45 10.92 temperature 30.0 1440 < th dose independent rect. 21 1
49 10.92 humidity 50.0 1440 > th dose independent rect. 21 1
55 10.92 atmosphere 995.0 1440 > th dose independent rect. 21 1
56 10.92 radiation 1.0 1440 < th dose independent rect. 21 1
76 10.92 temperature 10.0 1440 > th dose independent rect. 22 23
79 10.93 radiation 20.0 1440 < th dose dependent rect. 21 1
83 10.94 atmosphere 995.0 30 > th dose dependent rect. 20 1
87 10.95 wind 1.0 30 > th dose dependent rect. 20 1
89 10.95 humidity 50.0 30 > th dose dependent rect. 20 1
90 10.95 atmosphere 1005.0 30 > th dose dependent rect. 20 1
109 11.07 temperature 30.0 30 < th dose dependent rect. 20 1
151 11.24 wind 9.0 1440 < th dose independent rect. 21 1
167 11.81 temperature 20.0 90 < th dose dependent rect. 2 1
174 11.91 atmosphere 1005.0 10 < th dose dependent rect. 22 1
231 12.04 atmosphere 995.0 30 > th dose independent rect. 21 23
237 12.06 temperature 20.0 90 < th dose independent rect. 2 1
243 12.07 atmosphere 1015.0 10 < th dose independent rect. 22 22
264 12.09 precipitation 0.1 30 < th dose independent rect. 21 23
265 12.09 precipitation 0.1 30 < th dose dependent rect. 21 23
296 12.12 humidity 70.0 90 < th dose dependent rect. 19 1
415 12.16 humidity 70.0 90 < th dose independent rect. 19 1
468 12.21 humidity 80.0 90 > th dose independent rect. 14 1
469 12.21 humidity 80.0 10 > th dose independent rect. 14 2
482 12.21 temperature 20.0 90 < th dose dependent rect. 12 4
483 12.21 temperature 15.0 90 > th dose dependent rect. 22 8
496 12.22 wind 7.0 90 < th dose independent rect. 19 14
497 12.22 humidity 50.0 30 > th dose independent rect. 22 22
500 12.22 humidity 70.0 90 > th dose dependent rect. 14 1
501 12.22 humidity 70.0 10 > th dose dependent rect. 15 1
513 12.22 temperature 20.0 10 < th dose dependent rect. 12 4
515 12.23 radiation 1.0 90 < th dose independent rect. 14 1
516 12.23 precipitation 0.1 720 > th dose independent rect. 15 1
535 12.23 precipitation 0.1 90 < th dose independent rect. 19 14
542 12.23 wind 1.0 720 < th dose dependent rect. 15 1
543 12.23 wind 3.0 270 < th dose dependent rect. 18 1
548 12.23 radiation 1.0 90 < th dose dependent rect. 14 1
549 12.23 precipitation 0.1 720 > th dose dependent rect. 15 1
566 12.23 precipitation 0.1 90 < th dose dependent rect. 19 14
567 12.24 atmosphere 1005.0 90 < th dose independent rect. 2 1
568 12.24 atmosphere 1005.0 10 < th dose independent rect. 3 1
586 12.24 humidity 80.0 10 > th dose independent rect. 15 7
590 12.24 wind 1.0 90 > th dose independent rect. 9 10
591 12.24 temperature 10.0 90 > th dose independent rect. 9 10
592 12.24 atmosphere 1015.0 90 < th dose independent rect. 9 10
594 12.24 temperature 10.0 90 > th dose independent rect. 19 14
596 12.24 humidity 50.0 90 > th dose independent rect. 19 14
598 12.24 atmosphere 995.0 90 > th dose independent rect. 19 14
599 12.24 radiation 40.0 90 < th dose independent rect. 19 14
600 12.24 radiation 30.0 10 < th dose independent rect. 20 14
601 12.24 wind 1.0 30 > th dose independent rect. 20 15
606 12.24 atmosphere 1005.0 270 < th dose dependent rect. 18 1
610 12.25 wind 1.0 720 < th dose independent rect. 15 1
619 12.25 wind 1.0 30 > th dose independent rect. 11 9
623 12.25 wind 3.0 720 > th dose independent rect. 8 11
626 12.25 wind 5.0 10 < th dose independent rect. 20 14
628 12.25 temperature 30.0 90 < th dose independent rect. 19 14
648 12.26 precipitation 0.1 1440 < th dose independent rect. 21 2
664 12.26 temperature 20.0 90 < th dose independent rect. 12 4
671 12.26 atmosphere 995.0 90 > th dose independent rect. 9 10
672 12.26 wind 3.0 720 < th dose independent rect. 9 11
677 12.26 temperature 15.0 10 > th dose independent rect. 20 14
678 12.26 humidity 60.0 10 > th dose independent rect. 20 14
687 12.26 temperature 25.0 90 < th dose dependent rect. 14 1
696 12.26 precipitation 0.1 1440 < th dose dependent rect. 21 2
706 12.26 atmosphere 995.0 10 > th dose dependent rect. 22 22
710 12.27 temperature 20.0 90 < th dose independent rect. 14 1
720 12.27 wind 3.0 720 < th dose independent rect. 10 8
725 12.27 atmosphere 995.0 10 > th dose independent rect. 11 9
727 12.27 wind 9.0 90 < th dose independent rect. 9 10
730 12.27 temperature 10.0 10 > th dose independent rect. 10 10
733 12.27 atmosphere 1015.0 10 < th dose independent rect. 10 10
734 12.27 precipitation 0.1 90 < th dose independent rect. 9 10
735 12.27 precipitation 0.1 10 < th dose independent rect. 10 10
746 12.27 atmosphere 995.0 10 > th dose independent rect. 20 14
749 12.27 precipitation 0.1 10 < th dose independent rect. 20 14
760 12.27 temperature 25.0 10 < th dose dependent rect. 15 1
791 12.27 precipitation 0.1 90 < th dose dependent rect. 9 10
792 12.27 precipitation 0.1 10 < th dose dependent rect. 10 10
793 12.27 wind 9.0 10 < th dose dependent rect. 8 14
794 12.27 precipitation 0.1 10 < th dose dependent rect. 20 14
795 12.27 radiation 40.0 10 < th dose dependent rect. 20 15
818 12.28 temperature 20.0 90 > th dose independent rect. 22 8
833 12.28 temperature 30.0 10 < th dose independent rect. 20 14
879 12.28 wind 7.0 10 < th dose dependent rect. 15 7
881 12.28 wind 3.0 720 < th dose dependent rect. 10 8
886 12.28 wind 1.0 30 > th dose dependent rect. 10 10
887 12.28 wind 3.0 720 < th dose dependent rect. 10 11
889 12.28 radiation 40.0 90 < th dose dependent rect. 19 15
892 12.28 temperature 10.0 10 > th dose dependent rect. 22 22
895 12.29 wind 3.0 720 > th dose independent sin 22 NA
896 12.29 wind 3.0 720 < th dose independent sin 22 NA
927 12.29 wind 3.0 720 > th dose independent rect. 14 5
936 12.29 temperature 10.0 1440 > th dose independent rect. 12 9
962 12.29 temperature 10.0 1440 > th dose independent rect. 21 15
971 12.29 atmosphere 995.0 1440 > th dose independent rect. 21 15